Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 0.0e+00 1534.6 776 100.0
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 0.0e+00 1300.4 761 88.0
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.9e-158 563.9 746 49.6
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.6e-85 321.6 737 36.9
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 2.1e-64 251.5 677 37.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.0e-43 181.8 481 33.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 8.8e-39 166.4 394 33.8
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 5.7e-38 163.7 381 34.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.2e-37 161.8 497 33.6
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.3e-37 160.2 497 33.2
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.1e-36 159.5 380 36.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.1e-36 159.5 393 33.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.4e-36 159.1 500 33.2
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.0e-35 155.2 376 34.8
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.6e-35 154.8 379 34.0
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.4e-35 154.5 386 32.9
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 4.5e-35 154.1 440 32.5
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 7.7e-35 153.3 401 34.4
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.3e-34 152.5 474 30.0
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.9e-34 151.4 465 32.5
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 8.5e-34 149.8 536 29.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.9e-33 148.7 527 30.2
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 5.5e-33 147.1 540 28.7
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 7.2e-33 146.7 624 27.4
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.2e-32 146.0 439 33.0
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.7e-32 144.1 467 32.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 6.1e-32 143.7 645 27.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.0e-31 142.9 484 29.3
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.0e-31 142.9 456 31.1
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.0e-31 142.9 390 33.1
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.4e-31 142.5 458 31.4
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.3e-31 141.7 388 34.8
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.9e-31 141.0 352 37.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 8.8e-31 139.8 609 28.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.8e-31 139.8 458 31.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.0e-30 138.7 349 33.2
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 4.4e-30 137.5 397 31.0
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 5.7e-30 137.1 386 32.1
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.8e-29 134.8 397 33.2
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 3.7e-29 134.4 365 37.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 4.8e-29 134.0 383 31.3
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 5.3e-28 130.6 398 32.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.0e-27 128.6 388 32.5
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.5e-27 127.5 430 31.4
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.7e-26 125.6 459 29.6
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 3.8e-26 124.4 533 28.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 5.0e-26 124.0 374 31.0
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 8.5e-26 123.2 439 32.1
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 8.5e-26 123.2 390 31.3
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.2e-25 120.9 351 33.9
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 9.4e-25 119.8 390 31.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.4e-25 119.8 399 29.6
AUR62021192 Chenopodium quinoa HOM05D032681 ORTHO05D004092 2.7e-24 118.2 287 33.1
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 4.7e-24 117.5 469 28.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 8.0e-24 116.7 343 31.8
AUR62015983 Chenopodium quinoa HOM05D032681 ORTHO05D004092 1.4e-23 115.9 275 33.8
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.8e-23 115.5 382 31.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 5.2e-23 114.0 366 30.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 6.7e-23 113.6 433 28.6
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-22 112.5 493 27.6
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 3.3e-22 111.3 533 27.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 7.4e-22 110.2 325 33.5
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.7e-21 109.0 508 29.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.8e-21 108.2 317 30.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.7e-21 107.8 410 28.8
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 4.8e-21 107.5 398 30.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.8e-21 107.5 419 29.1
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.4e-20 105.1 339 33.0
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.1e-20 104.8 394 27.9
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.6e-19 102.4 349 30.9
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 3.5e-19 101.3 208 38.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.5e-19 100.9 283 33.2
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.5e-19 100.9 401 28.2
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 5.9e-19 100.5 464 26.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.0e-18 99.8 420 29.3
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 2.9e-18 98.2 404 27.5
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 3.8e-18 97.8 440 27.3
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.0e-18 97.4 268 35.1
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 8.5e-18 96.7 385 28.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.9e-17 95.5 281 33.5
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.5e-17 95.1 278 33.5
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.2e-17 94.7 340 28.8
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.2e-17 94.7 192 39.1
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 4.2e-17 94.4 404 27.5
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 4.2e-17 94.4 404 27.5
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.2e-16 92.8 337 29.1
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.7e-16 91.7 392 29.1
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 4.7e-16 90.9 248 29.4
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.8e-15 89.0 400 28.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.0e-15 88.2 339 30.4
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.0e-15 87.8 134 43.3
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 4.0e-15 87.8 343 28.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 5.2e-15 87.4 483 28.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 6.7e-15 87.0 404 27.5
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 6.7e-15 87.0 335 28.7
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.0e-14 85.5 332 30.1
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 2.6e-14 85.1 306 32.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.6e-14 85.1 403 28.3
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 3.3e-14 84.7 178 38.2
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 3.3e-14 84.7 413 29.3
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 3.3e-14 84.7 159 39.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 4.4e-14 84.3 406 28.8
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.4e-14 84.3 203 35.5
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 9.7e-14 83.2 220 30.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 9.7e-14 83.2 472 27.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 9.7e-14 83.2 424 29.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 1.7e-13 82.4 197 34.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.2e-13 82.0 334 28.4
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.2e-13 82.0 294 29.3
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.8e-13 81.6 486 27.6
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 4.8e-13 80.9 197 34.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.8e-13 80.9 173 33.5
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 6.3e-13 80.5 159 38.4
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.8e-12 79.0 449 26.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-12 79.0 396 27.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.4e-12 78.6 656 25.0
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.4e-12 78.6 423 26.2
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.4e-12 78.6 460 27.6
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.4e-12 78.6 370 28.1
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 4.1e-12 77.8 706 23.7
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.1e-12 77.8 153 39.9
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 5.3e-12 77.4 619 25.0
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.3e-12 77.4 223 31.4
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 5.3e-12 77.4 424 28.3
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.6e-11 75.9 172 34.9
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.0e-11 75.5 113 42.5
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.7e-11 75.1 371 26.7
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.7e-11 75.1 421 25.9
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.7e-11 75.1 459 26.4
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 5.9e-11 73.9 129 40.3
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 7.7e-11 73.6 340 27.1
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.0e-10 73.2 298 26.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.0e-10 73.2 467 26.8
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.7e-10 72.4 241 29.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.2e-10 72.0 382 28.5
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.1e-09 69.7 183 36.6
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.9e-09 68.9 254 29.1
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 2.5e-09 68.6 191 33.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 2.5e-09 68.6 145 35.9
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 3.2e-09 68.2 363 25.6
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 5.5e-09 67.4 177 30.5
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 7.2e-09 67.0 645 25.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.2e-08 66.2 359 29.5
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.2e-08 66.2 252 25.8
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.6e-08 65.9 170 35.3
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.6e-08 64.7 231 28.1
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.7e-08 64.3 170 34.7
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 4.7e-08 64.3 394 25.1
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 8.0e-08 63.5 401 25.7
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-07 63.2 478 25.3
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 4.0e-07 61.2 135 31.9
PGSC0003DMG400030008 Solanum tuberosum HOM05D004189 ORTHO05D004092 6.8e-07 60.5 120 35.0
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.2e-06 59.7 498 25.1
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 2.0e-06 58.9 295 27.1
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 2.0e-06 58.9 136 32.4
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.6e-06 58.5 161 31.1
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 2.6e-06 58.5 261 26.8
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 2.6e-06 58.5 285 23.9
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 5.7e-06 57.4 161 31.1
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 7.5e-06 57.0 536 23.3
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 7.5e-06 57.0 350 25.1


User provided reference genes

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