Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.2e-116 423.3 234 100.0
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 5.8e-111 404.4 234 96.2
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.6e-76 290.0 233 74.2
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.6e-71 272.7 233 71.7
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 2.9e-62 242.7 238 63.0
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.3e-57 227.3 223 63.2
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 4.1e-56 222.2 218 59.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.2e-55 220.7 233 57.9
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 4.5e-55 218.8 218 58.7
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 5.9e-55 218.4 235 56.2
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.6e-55 218.0 218 57.8
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.0e-54 217.6 218 58.3
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.9e-54 216.1 229 57.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 6.5e-54 214.9 218 56.9
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.9e-53 213.4 218 58.3
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.9e-53 213.4 228 56.1
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 3.2e-53 212.6 227 56.8
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.2e-53 211.5 227 55.9
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 9.3e-53 211.1 235 56.2
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.6e-52 210.3 227 55.1
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.1e-52 209.9 255 52.5
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.7e-52 209.5 215 56.7
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 3.6e-52 209.1 237 54.0
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 7.9e-52 208.0 228 57.0
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.3e-51 207.2 227 57.3
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 3.9e-51 205.7 236 55.1
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.7e-51 204.9 236 54.7
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.1e-50 204.1 234 52.6
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.5e-50 203.8 237 55.3
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 3.3e-50 202.6 220 57.3
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 3.3e-50 202.6 237 54.9
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 4.3e-50 202.2 235 54.0
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 4.3e-50 202.2 233 55.4
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.7e-50 201.8 240 53.8
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 7.4e-50 201.4 231 55.8
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 7.4e-50 201.4 226 51.8
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.2e-49 199.9 216 56.0
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.8e-49 199.5 224 56.2
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 2.8e-49 199.5 236 54.2
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 8.2e-49 198.0 224 55.8
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.4e-48 197.2 269 50.2
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 2.4e-48 196.4 236 53.0
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 4.1e-48 195.7 229 53.7
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 6.9e-48 194.9 222 55.9
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.2e-47 194.1 221 57.0
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.2e-47 194.1 280 48.9
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.2e-47 194.1 240 54.2
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.0e-47 193.4 225 54.2
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 5.9e-47 191.8 238 54.2
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 7.7e-47 191.4 216 54.2
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.7e-47 191.4 216 53.7
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.3e-46 190.7 223 54.3
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.7e-46 190.3 218 55.5
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 5.0e-46 188.7 231 51.1
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 8.5e-46 188.0 260 50.8
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.1e-45 187.6 213 54.5
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-45 187.2 236 52.1
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.9e-45 186.8 213 53.1
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.5e-45 186.4 221 54.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 2.5e-45 186.4 225 52.9
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.5e-45 186.4 224 52.2
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.2e-45 186.0 200 57.5
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 4.2e-45 185.7 232 51.7
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 5.5e-45 185.3 221 54.3
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 5.5e-45 185.3 258 47.7
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 7.2e-45 184.9 223 52.9
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 7.2e-45 184.9 217 55.3
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.2e-44 184.1 239 50.2
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.6e-44 183.7 210 53.3
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 1.4e-43 180.6 232 50.9
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-43 180.6 228 51.8
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 3.0e-43 179.5 221 52.9
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 5.1e-43 178.7 230 52.2
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 5.1e-43 178.7 221 52.5
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 8.8e-43 177.9 233 53.6
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 8.8e-43 177.9 242 49.6
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.1e-42 177.6 221 52.5
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.1e-42 177.6 221 52.5
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.1e-42 177.6 209 53.1
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.5e-42 177.2 222 48.6
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.6e-42 176.4 230 51.3
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 7.4e-42 174.9 219 52.5
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.7e-41 173.7 227 49.3
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 2.2e-41 173.3 224 50.0
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.2e-41 173.3 239 49.0
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 2.8e-41 172.9 218 51.4
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 6.3e-41 171.8 225 48.4
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.1e-40 171.0 216 50.5
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.4e-40 170.6 204 50.5
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.4e-40 170.6 207 55.1
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.8e-40 170.2 227 49.3
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 5.3e-40 168.7 222 51.4
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 9.1e-40 167.9 218 50.9
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.3e-38 164.1 222 46.8
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 2.2e-38 163.3 217 49.3
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.9e-38 162.9 224 49.1
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.9e-38 162.9 216 50.0
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 5.0e-38 162.2 210 48.6
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.9e-37 160.2 217 49.8
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.9e-37 160.2 336 37.2
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 4.2e-37 159.1 225 49.3
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 5.5e-37 158.7 218 49.1
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 5.5e-37 158.7 229 48.9
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.6e-36 157.1 191 53.4
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.6e-36 157.1 189 54.0
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.6e-36 157.1 189 54.0
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.8e-35 153.7 231 46.8
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 6.7e-35 151.8 220 46.4
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 6.7e-35 151.8 220 46.4
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 8.8e-35 151.4 253 42.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 8.8e-35 151.4 253 42.7
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 8.8e-35 151.4 224 47.3
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.0e-34 150.2 222 46.8
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.0e-34 150.2 222 46.8
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.0e-34 150.2 222 46.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 8.2e-33 144.8 220 45.9
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.3e-32 142.1 234 44.4
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.0e-31 140.2 217 46.5
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.0e-31 140.2 219 45.7
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.0e-31 140.2 219 45.7
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.9e-29 133.7 189 46.6
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.5e-26 124.0 216 40.3
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.7e-25 119.4 236 40.3
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 9.1e-24 114.8 163 47.9
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 2.0e-23 113.6 82 70.7
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 3.5e-23 112.8 201 42.3
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.0e-22 111.3 149 52.3
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.9e-22 109.8 159 46.5
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 8.5e-22 108.2 158 46.8
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.9e-21 107.1 305 33.4
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.9e-21 107.1 204 40.7
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.6e-20 104.0 158 50.6
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 2.3e-19 100.1 239 38.5
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 6.8e-19 98.6 131 51.1
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.9e-13 80.5 144 45.1
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.2e-13 79.3 82 53.7
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.2e-11 72.4 94 50.0
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.2e-10 71.2 69 63.8
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 8.3e-09 65.1 53 60.4
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 8.3e-09 65.1 53 60.4
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.1e-08 64.7 39 76.9
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 2.4e-08 63.5 152 36.8
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.0e-08 62.0 77 54.5
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 7.0e-08 62.0 90 48.9
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.3e-06 57.0 41 73.2
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.9e-06 56.6 41 73.2


User provided reference genes

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