Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.3e-280 969.5 1208 100.0
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.9e-276 954.9 1208 96.7
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.2e-193 678.7 815 96.6
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.6e-178 630.6 841 74.6
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.9e-173 614.4 1271 72.5
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.2e-135 488.8 1276 55.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.1e-83 316.2 926 64.5
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 7.5e-45 187.2 1566 45.7
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-44 186.0 174 66.1
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.7e-44 184.9 174 65.5
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.9e-42 177.6 165 67.3
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 9.8e-37 160.2 667 26.2
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.3e-36 159.8 248 44.8
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 8.3e-36 157.1 434 35.0
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 3.3e-32 145.2 666 28.2
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.2e-32 144.8 865 24.5
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.2e-31 143.3 451 32.6
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 8.0e-31 140.6 421 36.1
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 8.0e-31 140.6 403 32.0
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.4e-30 139.8 447 31.8
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.4e-30 139.8 407 38.1
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.8e-30 139.4 434 33.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.3e-30 139.0 398 39.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 3.0e-30 138.7 403 31.8
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 4.0e-30 138.3 450 29.8
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.0e-30 138.3 422 35.5
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 4.0e-30 138.3 646 28.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 6.8e-30 137.5 862 26.8
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 8.9e-30 137.1 416 36.5
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 2.6e-29 135.6 884 25.5
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.3e-28 133.3 488 32.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.8e-28 132.1 415 47.5
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 4.9e-28 131.3 402 33.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 4.9e-28 131.3 241 45.6
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 6.3e-28 131.0 445 40.7
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.4e-27 129.0 215 42.3
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.1e-27 128.6 241 35.7
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 7.0e-27 127.5 449 27.8
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.7e-26 125.6 237 36.7
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 3.5e-26 125.2 654 26.3
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.0e-25 123.6 453 28.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 6.6e-25 120.9 414 30.4
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 5.6e-24 117.9 420 30.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.2e-23 116.7 436 30.3
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.8e-23 115.5 436 39.7
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.7e-23 114.8 678 31.6
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 4.7e-23 114.8 235 33.6
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.9e-22 110.5 440 29.5
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.5e-21 109.8 186 43.0
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.5e-21 109.8 239 32.6
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.0e-21 109.4 884 23.9
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.6e-21 109.0 176 44.3
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 3.4e-21 108.6 449 29.4
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 4.4e-21 108.2 436 29.6
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 5.8e-21 107.8 436 30.3
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.3e-20 106.7 203 41.4
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.7e-20 106.3 885 24.9
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.4e-19 103.2 234 32.9
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.9e-19 102.8 438 28.5
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.9e-19 102.8 658 31.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 2.4e-19 102.4 237 40.9
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.2e-19 102.1 223 33.6
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.1e-19 101.7 202 35.6
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.0e-19 100.9 240 30.4
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 7.0e-19 100.9 433 33.5
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.6e-18 99.8 401 28.7
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.7e-18 99.0 450 26.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 3.5e-18 98.6 176 42.0
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.3e-17 96.7 182 37.9
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 1.3e-17 96.7 435 27.6
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.7e-17 96.3 235 30.6
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.7e-17 96.3 178 41.6
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 5.0e-17 94.7 272 31.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 5.0e-17 94.7 178 41.0
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 5.0e-17 94.7 480 27.9
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 5.0e-17 94.7 179 40.2
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.6e-17 94.4 240 39.2
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 8.6e-17 94.0 91 51.6
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.1e-16 93.6 170 37.6
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.5e-16 93.2 241 32.0
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.5e-16 93.2 181 40.3
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.3e-16 92.0 173 38.2
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 5.6e-16 91.3 448 29.7
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 7.3e-16 90.9 225 32.0
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 9.5e-16 90.5 173 37.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.2e-15 90.1 89 52.8
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.6e-15 89.7 462 27.5
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 2.1e-15 89.4 235 44.3
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 4.7e-15 88.2 419 27.0
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 8.0e-15 87.4 174 36.8
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-14 86.7 83 53.0
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-14 86.7 82 53.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.1e-14 85.5 165 36.4
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 4.0e-14 85.1 84 51.2
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 4.0e-14 85.1 242 38.4
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 5.2e-14 84.7 83 51.8
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.2e-14 84.7 83 51.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.2e-14 84.7 83 51.8
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.8e-14 84.3 177 37.3
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 8.9e-14 84.0 666 23.6
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.2e-13 83.6 88 47.7
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.6e-13 82.4 871 25.8
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 4.4e-13 81.6 181 37.6
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 5.8e-13 81.3 174 39.7
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 5.8e-13 81.3 174 39.7
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 5.8e-13 81.3 174 39.7
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 7.5e-13 80.9 177 37.9
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 7.5e-13 80.9 194 36.1
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.3e-12 80.1 164 34.1
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.7e-12 79.7 240 31.2
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.7e-12 78.6 88 52.3
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 3.7e-12 78.6 81 49.4
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 6.4e-12 77.8 229 27.5
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.1e-11 77.0 490 29.6
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 5.4e-11 74.7 84 48.8
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 7.0e-11 74.3 171 39.2
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 1.6e-10 73.2 475 32.0
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.1e-10 72.8 228 26.3
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.7e-10 72.4 181 48.1
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 3.5e-10 72.0 71 59.2
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.6e-10 71.6 87 48.3
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 4.6e-10 71.6 168 37.5
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 4.6e-10 71.6 70 58.6
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 6.0e-10 71.2 279 28.0
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 6.0e-10 71.2 279 28.0
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 6.0e-10 71.2 168 39.3
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.3e-09 70.1 137 38.0
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.3e-09 70.1 177 35.0
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 6.6e-09 67.8 78 47.4
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.1e-08 67.0 185 32.4
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.5e-08 66.6 164 37.8
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 2.5e-08 65.9 246 29.3
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 3.3e-08 65.5 273 29.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 3.3e-08 65.5 165 40.6
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.3e-08 65.5 222 33.8
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.6e-08 64.7 470 37.9
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 7.3e-08 64.3 79 53.2
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 7.3e-08 64.3 170 38.2
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 6.2e-07 61.2 146 36.3
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 6.2e-07 61.2 465 32.7
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-06 59.7 249 29.3
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.8e-06 59.7 118 38.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.3e-06 59.3 177 37.3
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 8.9e-06 57.4 179 31.8


User provided reference genes

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