Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.2e-66 254.6 134 100.0
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.1e-53 213.4 123 91.9
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 1.8e-48 196.1 107 93.5
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 6.8e-48 194.1 112 86.6
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.3e-46 189.9 113 85.0
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.7e-46 189.5 112 83.0
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.7e-46 189.5 112 83.0
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.7e-46 189.5 112 83.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 3.7e-46 188.3 109 83.5
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 4.9e-46 188.0 112 84.8
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 4.9e-46 188.0 112 84.8
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 4.9e-46 188.0 111 87.4
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 6.3e-46 187.6 112 84.8
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.1e-45 186.8 117 85.5
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.4e-45 186.4 109 82.6
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.4e-45 186.4 109 82.6
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.4e-45 186.4 109 82.6
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.4e-45 186.4 117 81.2
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.8e-45 186.0 113 84.1
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.8e-45 186.0 109 84.4
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.8e-45 186.0 109 85.3
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.4e-45 185.7 110 85.5
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 2.4e-45 185.7 109 84.4
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.4e-45 185.7 109 82.6
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 4.1e-45 184.9 109 83.5
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 4.1e-45 184.9 111 82.9
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 7.0e-45 184.1 109 85.3
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 7.0e-45 184.1 112 84.8
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.2e-44 183.3 109 83.5
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.2e-44 183.3 112 84.8
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-44 183.3 109 81.7
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-44 183.3 109 81.7
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-44 183.3 109 81.7
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.2e-44 183.3 109 81.7
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 1.2e-44 183.3 107 86.0
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.2e-44 183.3 109 83.5
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.6e-44 183.0 112 83.0
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 2.0e-44 182.6 102 89.2
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 2.0e-44 182.6 110 82.7
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 2.0e-44 182.6 102 87.3
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.7e-44 182.2 112 83.0
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 2.7e-44 182.2 109 83.5
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 2.7e-44 182.2 112 84.8
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 2.7e-44 182.2 112 83.0
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.7e-44 182.2 112 83.0
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 3.5e-44 181.8 109 82.6
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.5e-44 181.8 109 82.6
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 3.5e-44 181.8 110 80.9
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 4.5e-44 181.4 113 84.1
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 4.5e-44 181.4 112 83.0
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 5.9e-44 181.0 111 80.2
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 7.7e-44 180.6 112 82.1
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 5.0e-43 177.9 112 80.4
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.1e-42 176.8 113 79.6
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 1.5e-42 176.4 120 76.7
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 2.5e-42 175.6 121 76.9
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 3.3e-42 175.3 113 80.5
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 3.3e-42 175.3 115 80.0
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 4.2e-42 174.9 113 77.0
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 4.2e-42 174.9 112 79.5
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 5.6e-42 174.5 110 79.1
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 5.6e-42 174.5 112 81.2
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 5.6e-42 174.5 105 78.1
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 5.6e-42 174.5 117 77.8
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 5.6e-42 174.5 110 79.1
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 7.2e-42 174.1 100 88.0
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 9.5e-42 173.7 113 77.0
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 1.2e-41 173.3 112 80.4
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 1.6e-41 172.9 118 78.8
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 2.1e-41 172.6 111 82.0
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 2.1e-41 172.6 111 82.0
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 2.8e-41 172.2 109 78.9
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 2.8e-41 172.2 109 78.9
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 3.6e-41 171.8 109 80.7
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 3.6e-41 171.8 109 80.7
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 3.6e-41 171.8 109 80.7
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 3.6e-41 171.8 109 80.7
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 3.6e-41 171.8 114 77.2
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 4.7e-41 171.4 109 79.8
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 4.7e-41 171.4 109 79.8
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 6.1e-41 171.0 113 77.0
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 8.0e-41 170.6 109 79.8
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 8.0e-41 170.6 112 77.7
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 8.0e-41 170.6 112 77.7
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.0e-40 170.2 112 76.8
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.4e-40 169.9 111 73.9
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.8e-40 169.5 109 78.9
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 1.8e-40 169.5 113 74.3
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 2.3e-40 169.1 109 78.9
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 2.3e-40 169.1 109 78.9
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 2.3e-40 169.1 112 75.0
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 4.0e-40 168.3 120 73.3
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 4.0e-40 168.3 109 78.0
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 4.0e-40 168.3 109 78.0
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 4.0e-40 168.3 114 75.4
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 4.0e-40 168.3 109 77.1
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 6.8e-40 167.5 110 78.2
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 8.9e-40 167.2 142 67.6
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 1.5e-39 166.4 109 77.1
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.5e-39 166.4 112 73.2
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 2.0e-39 166.0 96 85.4
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 3.4e-39 165.2 109 76.1
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 4.4e-39 164.9 109 76.1
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 5.7e-39 164.5 104 76.9
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 5.7e-39 164.5 104 76.9
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 7.5e-39 164.1 96 85.4
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 7.5e-39 164.1 96 85.4
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 6.4e-38 161.0 104 76.0
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.8e-37 159.5 112 75.9
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.8e-37 159.5 104 77.9
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 2.4e-37 159.1 95 85.3
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 5.4e-37 157.9 132 68.9
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 1.3e-35 153.3 101 71.3
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 4.3e-34 148.3 100 72.0
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 7.3e-34 147.5 97 72.2
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 2.1e-33 146.0 118 69.5
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 3.6e-33 145.2 187 48.1
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 6.2e-33 144.4 115 70.4
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.1e-32 142.1 109 68.8
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.9e-29 132.9 79 84.8
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 5.4e-29 131.3 97 66.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 4.6e-28 128.3 100 67.0
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.9e-26 122.9 70 82.9
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 2.1e-25 119.4 100 65.0
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 1.4e-24 116.7 110 59.1
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 1.5e-23 113.2 98 60.2
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 4.6e-20 101.7 52 88.5
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.0e-19 100.5 120 52.5
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 8.6e-19 97.4 54 81.5
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.5e-18 95.9 55 83.6
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 7.3e-18 94.4 78 59.0
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 7.3e-18 94.4 61 80.3
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.2e-17 93.6 58 81.0
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 2.1e-17 92.8 57 80.7
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 4.7e-17 91.7 96 50.0
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 8.1e-17 90.9 76 60.5
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 1.1e-16 90.5 56 82.1
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 1.8e-16 89.7 60 80.0
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 4.0e-16 88.6 61 77.0
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 8.9e-16 87.4 57 78.9
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 2.6e-15 85.9 59 72.9
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 1.7e-14 83.2 45 84.4
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 1.7e-14 83.2 57 78.9
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 6.4e-14 81.3 105 51.4
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.9e-13 79.7 105 41.0
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 2.3e-11 72.8 113 41.6
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 9.6e-10 67.4 80 50.0
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 3.1e-08 62.4 37 78.4
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 5.2e-08 61.6 37 81.1
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 1.2e-07 60.5 48 68.8
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 2.0e-07 59.7 41 70.7


User provided reference genes

Program Settings