Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 6.9e-107 390.6 188 100.0
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.5e-104 382.1 188 97.9
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 8.5e-81 303.9 187 79.1
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.9e-80 302.8 184 78.8
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.2e-70 268.1 187 64.2
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 6.8e-70 267.7 186 66.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 8.8e-70 267.3 182 68.1
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.2e-69 266.9 180 69.4
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.2e-69 266.9 185 68.1
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.2e-69 266.9 176 71.0
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.5e-69 266.5 185 68.6
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 7.5e-69 264.2 183 67.8
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.3e-68 263.5 183 66.1
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.2e-68 262.7 184 66.8
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.2e-68 262.7 174 68.4
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.1e-67 260.4 177 68.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.4e-67 260.0 185 64.9
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.4e-67 260.0 180 65.6
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.4e-67 260.0 177 67.8
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 2.4e-67 259.2 178 68.0
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 3.1e-67 258.8 178 66.3
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 3.1e-67 258.8 180 65.6
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 3.1e-67 258.8 182 65.4
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.4e-67 258.1 184 62.5
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.4e-67 258.1 184 62.5
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 5.4e-67 258.1 184 65.2
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 9.1e-67 257.3 185 65.9
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.2e-66 256.9 177 67.8
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.2e-66 256.9 178 65.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.6e-66 256.5 177 66.7
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.6e-66 256.5 173 68.2
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 2.0e-66 256.1 180 64.4
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.7e-66 255.8 177 63.3
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.5e-66 255.4 177 67.8
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.5e-66 255.4 183 66.7
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 4.5e-66 255.0 178 66.3
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 7.7e-66 254.2 179 64.2
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.0e-65 253.8 185 65.4
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 1.0e-65 253.8 185 64.9
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.9e-65 252.3 177 66.7
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 2.9e-65 252.3 181 65.2
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 2.9e-65 252.3 182 64.3
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.9e-65 252.3 177 66.1
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 3.8e-65 251.9 177 67.8
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 3.8e-65 251.9 180 64.4
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 6.5e-65 251.1 180 63.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 8.6e-65 250.8 183 66.1
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.1e-64 250.4 179 63.1
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 1.5e-64 250.0 182 63.2
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.5e-64 250.0 177 63.8
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.2e-64 248.8 177 66.7
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 3.2e-64 248.8 180 63.9
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 4.2e-64 248.4 182 64.3
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.5e-64 248.1 185 63.8
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 5.5e-64 248.1 177 65.0
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 5.5e-64 248.1 177 63.3
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 9.5e-64 247.3 182 65.4
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 9.5e-64 247.3 178 65.2
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 9.5e-64 247.3 175 63.4
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.2e-63 246.9 178 63.5
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 2.1e-63 246.1 177 63.3
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 2.8e-63 245.7 179 61.5
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 3.6e-63 245.4 181 63.5
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.6e-63 245.4 179 60.9
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.6e-63 245.4 178 65.2
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.0e-62 243.8 177 65.0
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.3e-62 242.7 178 62.9
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 3.0e-62 242.3 184 61.4
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 3.0e-62 242.3 173 65.9
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 4.0e-62 241.9 172 65.1
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 4.0e-62 241.9 172 64.5
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 4.0e-62 241.9 178 61.2
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 5.2e-62 241.5 178 61.8
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 5.2e-62 241.5 186 60.8
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 6.8e-62 241.1 174 64.9
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 6.8e-62 241.1 179 60.9
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.5e-61 240.0 169 65.7
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.5e-61 240.0 179 60.9
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 2.6e-61 239.2 182 62.1
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 3.4e-61 238.8 179 59.8
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 4.4e-61 238.4 181 62.4
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.2e-60 236.1 163 67.5
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 2.8e-60 235.7 181 63.0
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.1e-59 233.8 174 59.2
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.1e-59 233.8 174 59.2
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 4.1e-59 231.9 175 57.1
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 5.4e-59 231.5 174 62.6
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 7.0e-59 231.1 176 56.8
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 3.5e-58 228.8 167 64.7
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 7.8e-58 227.6 174 62.1
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.7e-57 226.5 167 64.1
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 2.9e-57 225.7 157 67.5
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.0e-57 224.9 177 59.3
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.3e-56 221.9 153 66.7
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 7.3e-56 221.1 163 60.7
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 3.6e-55 218.8 163 62.6
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.4e-54 216.9 154 63.6
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 3.0e-54 215.7 175 60.6
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 5.2e-54 214.9 156 63.5
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.4e-53 211.8 156 62.2
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 7.5e-53 211.1 172 57.0
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 4.1e-51 205.3 159 58.5
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.3e-49 199.5 151 61.6
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 4.7e-47 191.8 174 55.2
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.1e-46 190.7 182 46.2
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.4e-45 185.7 179 49.2
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 5.8e-45 184.9 180 48.3
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.0e-41 174.1 187 44.4
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.0e-41 172.6 134 59.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 8.1e-39 164.5 124 61.3
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.3e-36 157.1 154 53.2
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.1e-34 149.8 181 43.6
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 4.9e-28 128.6 138 50.0
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 5.8e-21 105.1 167 34.1
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 8.4e-20 101.3 163 39.9
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.3e-17 93.2 59 71.2
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 2.5e-16 89.7 67 62.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 1.4e-14 84.0 154 38.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.2e-12 76.6 90 47.8
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 3.7e-07 59.3 173 27.7
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 4.8e-07 58.9 195 26.7
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 4.8e-07 58.9 176 25.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 4.8e-07 58.9 173 26.6
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 4.8e-07 58.9 207 26.6
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 6.2e-07 58.5 182 27.5
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 6.2e-07 58.5 188 27.1
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 1.1e-06 57.8 195 26.2
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.1e-06 57.8 195 26.2
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.1e-06 57.8 195 26.2
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 1.1e-06 57.8 195 26.2
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.4e-06 57.4 195 25.6
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-06 57.0 195 24.6
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.8e-06 57.0 195 24.6
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.8e-06 57.0 195 25.6
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.8e-06 57.0 146 28.8
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.4e-06 56.6 185 27.6
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 3.1e-06 56.2 172 25.6
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 3.1e-06 56.2 175 25.1
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 3.1e-06 56.2 182 27.5
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 4.0e-06 55.8 176 26.7
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 4.0e-06 55.8 194 27.8
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 4.0e-06 55.8 172 25.6
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 5.3e-06 55.5 175 27.4
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 6.9e-06 55.1 193 28.5
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 6.9e-06 55.1 172 25.6
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 9.0e-06 54.7 196 26.5
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 9.0e-06 54.7 175 25.1


User provided reference genes

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