Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 8.1e-211 736.9 386 100.0
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.2e-168 595.9 446 75.1
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 6.1e-126 454.9 479 57.8
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.0e-124 449.9 478 57.3
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.6e-124 449.5 470 58.5
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 3.4e-124 449.1 474 56.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 4.4e-124 448.7 472 56.8
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 9.8e-124 447.6 471 56.1
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 9.8e-124 447.6 473 56.2
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.3e-123 447.2 472 56.8
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 4.9e-123 445.3 475 56.8
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 8.3e-123 444.5 475 56.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 7.8e-121 438.0 469 56.1
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.3e-120 436.4 474 55.3
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.8e-120 435.6 478 55.0
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.1e-119 434.1 473 56.2
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.6e-118 430.3 475 54.7
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.8e-118 429.5 490 54.1
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.6e-118 429.1 475 55.2
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 4.7e-118 428.7 467 53.5
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.0e-117 427.6 498 52.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.8e-117 426.8 504 52.2
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.3e-117 426.4 474 53.6
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 2.3e-117 426.4 474 54.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 3.0e-117 426.0 475 54.5
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 4.0e-117 425.6 478 54.4
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.2e-116 424.1 476 54.4
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.5e-116 423.7 488 52.3
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.5e-116 423.7 482 54.1
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.4e-116 422.5 479 54.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.4e-116 422.2 470 53.8
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.5e-116 421.4 480 52.7
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.5e-116 421.4 470 53.4
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 9.8e-116 421.0 467 54.0
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 2.2e-115 419.9 487 54.2
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.2e-115 419.9 483 53.0
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 4.9e-115 418.7 488 53.1
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-114 417.5 467 54.2
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.1e-114 417.5 475 54.5
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.4e-114 417.2 476 53.4
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.8e-114 416.8 475 52.2
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.8e-114 416.8 514 51.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-114 416.4 467 53.5
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.4e-114 416.4 470 54.7
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.2e-114 416.0 480 52.5
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 4.1e-114 415.6 467 54.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.1e-114 415.6 480 51.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 5.4e-114 415.2 479 52.6
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 7.0e-114 414.8 469 52.9
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 9.2e-114 414.5 472 54.4
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.2e-113 414.1 457 54.0
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.6e-113 413.7 468 53.6
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.7e-113 412.9 467 53.1
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 6.0e-113 411.8 469 53.9
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 7.8e-113 411.4 473 53.3
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 7.8e-113 411.4 473 53.3
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.7e-112 410.2 470 54.0
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.7e-112 410.2 471 52.4
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.3e-112 409.8 467 54.2
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.3e-112 409.8 465 54.2
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.0e-112 409.5 474 53.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 3.0e-112 409.5 467 51.2
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.0e-112 409.5 479 54.1
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 8.6e-112 407.9 473 53.5
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 8.6e-112 407.9 473 53.5
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 8.6e-112 407.9 527 49.1
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.9e-111 406.8 470 51.9
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.3e-111 406.0 486 52.7
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.3e-111 406.0 467 51.0
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.2e-110 404.1 467 51.6
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 3.6e-110 402.5 467 52.0
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 8.0e-110 401.4 473 52.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-109 401.0 465 52.0
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.1e-109 401.0 472 52.3
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.8e-109 400.2 467 51.4
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 3.1e-109 399.4 468 53.0
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.1e-109 399.4 469 52.7
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 5.2e-109 398.7 463 54.2
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 8.9e-109 397.9 471 53.3
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.0e-108 396.7 452 53.1
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.2e-107 393.3 467 52.5
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 4.9e-107 392.1 467 52.2
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 8.3e-107 391.3 468 52.6
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.3e-107 391.3 452 50.9
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.4e-106 390.6 500 49.8
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.9e-106 390.2 507 48.5
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 2.4e-106 389.8 468 51.7
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.2e-105 387.5 396 56.1
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.7e-105 386.3 429 55.2
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.7e-105 386.3 463 51.4
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 3.5e-105 386.0 471 52.4
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.5e-105 386.0 467 51.0
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 6.0e-105 385.2 471 51.0
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 6.0e-105 385.2 478 50.4
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 1.7e-104 383.6 470 50.6
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 3.9e-104 382.5 433 54.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.6e-104 381.3 353 60.1
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.9e-103 380.2 434 54.4
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.5e-103 379.8 510 47.5
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 5.6e-103 378.6 359 59.1
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 7.3e-103 378.3 489 49.7
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 3.6e-102 375.9 470 50.2
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 8.1e-102 374.8 399 54.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 3.1e-101 372.9 455 51.6
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 4.0e-101 372.5 463 50.3
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 4.0e-101 372.5 455 51.4
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 4.0e-101 372.5 472 50.2
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 5.2e-101 372.1 533 46.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 8.9e-101 371.3 516 47.3
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.6e-100 369.8 333 59.8
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.3e-99 367.5 481 49.1
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.4e-98 363.2 388 55.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-97 360.1 465 49.2
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.5e-97 359.4 361 56.0
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.0e-96 357.8 471 48.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 6.6e-96 355.1 455 50.3
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 6.6e-96 355.1 473 49.3
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 6.6e-96 355.1 381 54.6
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 8.6e-96 354.8 483 47.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.5e-95 353.2 403 53.3
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.5e-95 353.2 197 85.3
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.3e-95 352.8 197 85.8
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 2.4e-93 346.7 488 48.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 5.2e-93 345.5 464 46.6
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 8.9e-93 344.7 447 48.3
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.0e-92 343.6 194 84.0
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.9e-91 339.7 460 49.8
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.1e-90 337.8 485 45.6
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.5e-87 327.4 546 43.2
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.9e-87 327.0 502 46.2
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.2e-86 324.3 448 47.1
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.7e-86 322.4 331 52.6
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 9.0e-85 318.2 406 49.8
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.6e-84 315.1 390 50.8
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.2e-83 313.5 457 44.4
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.9e-83 313.2 403 50.1
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.2e-82 309.3 425 48.2
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.7e-81 306.6 190 74.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.3e-80 303.5 197 72.1
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 6.0e-73 278.9 197 62.9
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.0e-72 278.1 335 48.7
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.6e-70 270.8 195 66.2
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-63 248.1 264 53.4
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.6e-60 235.3 357 42.6
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.3e-43 181.4 122 70.5
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.1e-41 174.1 387 37.0
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.5e-36 156.8 211 41.2
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.2e-35 154.1 120 66.7
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.6e-33 146.7 426 33.3
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.0e-28 131.0 81 76.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 6.5e-19 99.4 298 32.9
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.0e-16 92.0 206 39.3
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 8.3e-14 82.4 199 38.2
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 8.3e-14 82.4 193 36.8
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.8e-06 57.4 92 42.4


User provided reference genes

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