Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 0.0e+00 1087.0 551 100.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 4.6e-300 1033.9 551 95.5
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.1e-257 892.1 569 81.0
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 3.5e-252 874.8 551 80.9
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.6e-234 815.5 550 75.8
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 5.7e-218 761.1 442 85.5
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 6.3e-217 757.7 443 84.4
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 5.3e-216 754.6 442 84.4
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.1e-213 746.9 448 83.0
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.2e-213 745.3 449 81.5
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.6e-212 741.9 449 81.3
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 4.7e-212 741.5 438 83.8
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 6.1e-212 741.1 442 83.3
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 6.1e-212 741.1 438 83.1
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 8.0e-212 740.7 436 83.7
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.0e-212 740.7 442 82.8
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.0e-211 740.3 438 83.1
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.8e-211 739.6 437 83.3
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.8e-211 739.6 438 81.7
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 2.3e-211 739.2 438 82.0
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.0e-211 738.8 444 81.8
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 5.2e-211 738.0 438 83.6
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.8e-211 737.6 438 83.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 8.8e-211 737.3 443 81.5
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.5e-210 736.5 448 80.4
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.5e-210 736.5 438 81.7
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 2.0e-210 736.1 438 80.8
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-210 735.3 441 81.2
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 5.7e-210 734.6 437 81.7
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 5.7e-210 734.6 434 83.2
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 7.5e-210 734.2 440 80.9
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.7e-209 733.0 458 78.4
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.2e-209 732.6 436 81.4
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 2.8e-209 732.3 461 78.3
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 6.3e-209 731.1 438 82.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 8.3e-209 730.7 437 81.7
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.4e-208 729.9 451 80.5
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 1.8e-208 729.6 436 81.4
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 2.4e-208 729.2 450 80.7
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.4e-208 728.0 443 80.6
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 5.4e-208 728.0 464 78.0
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 7.0e-208 727.6 436 81.2
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 1.2e-207 726.9 436 81.9
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 2.0e-207 726.1 439 81.3
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.7e-207 725.7 473 77.0
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 7.7e-207 724.2 437 80.5
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.2e-206 722.6 444 79.3
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 2.9e-206 722.2 439 80.4
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.9e-206 722.2 439 81.8
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.8e-206 721.8 437 81.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 6.5e-206 721.1 430 83.0
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.2e-205 718.8 436 80.7
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 7.2e-205 717.6 437 81.0
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 9.5e-205 717.2 541 68.8
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.2e-204 716.8 436 80.7
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.6e-204 716.5 443 77.9
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.1e-204 716.1 424 83.0
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 3.6e-204 715.3 443 79.2
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 3.6e-204 715.3 437 80.5
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.4e-203 713.4 437 79.6
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.8e-203 713.0 424 82.5
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.8e-203 713.0 437 79.9
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.3e-203 712.6 439 81.1
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 2.3e-203 712.6 437 79.2
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.0e-203 712.2 452 77.9
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.8e-203 710.7 438 79.7
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-202 709.5 425 80.7
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-202 709.5 425 80.7
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.0e-202 709.5 452 77.9
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.6e-202 709.1 449 77.7
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 3.4e-202 708.8 439 79.3
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 5.7e-202 708.0 425 83.1
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 9.8e-202 707.2 424 81.8
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 9.8e-202 707.2 436 78.7
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-201 706.4 435 80.5
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-201 706.4 438 79.9
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.2e-201 706.1 435 80.2
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 6.3e-201 704.5 446 78.3
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 6.3e-201 704.5 436 79.6
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.4e-200 702.6 467 75.8
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.1e-200 702.2 438 78.3
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 4.1e-200 701.8 424 80.4
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 5.4e-200 701.4 425 82.1
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 9.2e-200 700.7 437 76.9
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.2e-199 700.3 422 81.0
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.6e-199 699.9 450 77.8
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.6e-199 699.9 425 81.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 2.0e-199 699.5 437 78.7
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.7e-198 696.4 424 80.0
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.7e-198 696.4 462 74.0
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.9e-198 695.7 440 78.2
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 3.8e-198 695.3 438 78.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 6.6e-198 694.5 422 80.8
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.9e-197 693.0 429 79.0
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.9e-197 693.0 422 81.0
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.3e-197 692.2 422 81.0
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 3.3e-197 692.2 422 81.0
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.3e-197 692.2 439 75.4
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 4.7e-196 688.3 483 73.5
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.4e-195 686.8 440 77.3
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.4e-195 686.8 542 67.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.8e-195 686.4 461 74.8
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.6e-194 682.6 422 79.9
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.6e-194 682.6 422 79.4
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 4.4e-194 681.8 470 72.3
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 3.2e-192 675.6 462 74.7
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.2e-191 673.7 453 73.1
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.7e-191 672.5 453 73.1
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.0e-190 670.6 435 73.8
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.1e-189 667.2 439 77.2
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.0e-183 644.8 399 80.5
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.0e-182 644.0 519 63.6
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.5e-181 639.4 400 78.5
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.3e-181 638.6 499 66.7
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 1.6e-180 636.7 426 71.4
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 4.0e-179 632.1 439 69.5
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.7e-177 625.5 516 61.6
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 3.4e-170 602.4 432 67.6
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.0e-166 590.9 365 77.8
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 6.4e-153 545.0 324 82.4
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.4e-147 526.6 307 85.7
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.4e-144 517.3 315 81.3
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 3.2e-144 516.2 432 59.5
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 5.6e-141 505.4 432 60.4
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-140 504.2 297 82.8
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.2e-138 497.7 326 75.8
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.7e-137 493.8 429 57.3
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.7e-133 478.8 319 74.0
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-132 477.2 297 80.5
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 7.4e-125 451.8 273 79.9
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.8e-124 449.9 297 76.1
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.8e-118 428.3 263 80.2
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 8.2e-116 421.8 424 53.1
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.3e-107 392.5 428 47.0
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.9e-97 360.1 242 75.6
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.8e-94 349.0 434 44.0
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.3e-78 297.4 176 79.5
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.1e-72 278.5 365 43.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.1e-63 247.7 230 58.3
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.6e-57 225.7 133 80.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.8e-52 210.3 159 67.9
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 7.6e-45 186.0 180 52.8
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.1e-43 182.2 120 69.2
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 7.1e-43 179.5 125 72.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.1e-43 179.5 131 67.9
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.6e-34 151.8 90 75.6
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-31 141.7 90 80.0
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 9.3e-27 125.9 91 65.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 9.3e-27 125.9 91 65.9
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-26 125.6 113 58.4
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 7.9e-26 122.9 78 71.8
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 5.1e-25 120.2 80 70.0
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.5e-24 118.6 80 70.0
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 5.6e-24 116.7 80 68.8
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 2.8e-23 114.4 77 68.8
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.1e-19 102.4 162 42.6
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-19 102.4 71 70.4
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.1e-19 102.4 71 70.4
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 5.5e-19 100.1 258 30.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 3.0e-17 94.4 57 78.9
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.0e-17 94.4 82 62.2


User provided reference genes

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