Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.4e-142 509.6 260 100.0
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.2e-136 490.0 278 91.7
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 4.6e-125 451.4 278 83.5
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 7.1e-118 427.6 283 76.3
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.2e-117 426.8 283 75.3
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 2.1e-117 426.0 281 75.8
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 2.7e-117 425.6 281 76.2
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.7e-116 422.9 283 75.3
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 1.7e-116 422.9 283 74.9
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.7e-116 422.9 283 75.6
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.7e-116 422.9 283 75.6
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 3.0e-116 422.2 283 75.6
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 5.1e-116 421.4 283 75.3
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 5.1e-116 421.4 283 74.6
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 6.6e-116 421.0 283 76.3
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.1e-115 420.2 283 73.9
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 2.5e-115 419.1 283 74.6
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.5e-115 419.1 283 73.9
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.3e-115 418.7 283 73.9
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 3.3e-115 418.7 283 73.9
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 7.3e-115 417.5 283 74.2
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 9.5e-115 417.2 283 73.1
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-114 416.8 283 73.5
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 1.6e-114 416.4 283 73.9
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 6.2e-114 414.5 283 73.1
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.1e-113 413.7 283 72.1
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.1e-113 413.7 283 73.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.8e-113 412.9 283 72.8
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 4.0e-113 411.8 283 73.5
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 4.0e-113 411.8 283 72.4
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 5.2e-113 411.4 283 72.1
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 6.8e-113 411.0 283 72.8
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.2e-112 410.2 283 72.8
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.2e-112 410.2 283 73.1
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 2.6e-112 409.1 282 72.7
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.6e-112 409.1 283 72.4
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 7.6e-112 407.5 283 72.8
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 9.9e-112 407.1 283 72.1
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 2.2e-111 406.0 283 70.7
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 2.9e-111 405.6 283 71.4
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 2.9e-111 405.6 282 70.9
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 8.4e-111 404.1 282 71.6
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 8.4e-111 404.1 283 70.7
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 8.4e-111 404.1 283 72.1
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 8.4e-111 404.1 283 71.4
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.1e-110 403.7 283 73.9
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.1e-110 403.7 283 71.0
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 1.1e-110 403.7 283 71.0
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 1.4e-110 403.3 283 71.4
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 1.4e-110 403.3 283 70.7
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.9e-110 402.9 283 71.4
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 3.2e-110 402.1 283 71.7
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.2e-110 402.1 283 72.4
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 4.1e-110 401.7 294 69.4
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.1e-110 401.7 289 70.9
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 5.4e-110 401.4 270 74.4
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.1e-110 401.0 285 73.0
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 9.2e-110 400.6 283 70.3
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.6e-109 399.8 283 71.7
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 2.7e-109 399.1 283 70.3
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 4.6e-109 398.3 287 71.4
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.3e-108 396.7 267 77.2
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.9e-108 395.2 283 71.7
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 8.6e-108 394.0 283 71.0
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.5e-107 392.5 278 70.9
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.5e-107 392.5 283 70.0
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 3.3e-107 392.1 283 71.0
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 7.3e-107 391.0 260 79.6
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 1.2e-106 390.2 267 76.0
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 2.1e-106 389.4 283 69.6
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.1e-106 389.4 317 65.0
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 2.4e-105 386.0 283 69.6
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 2.4e-105 386.0 283 69.6
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 4.0e-105 385.2 284 70.1
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 5.2e-105 384.8 291 68.4
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 2.6e-104 382.5 342 59.9
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 7.6e-104 380.9 283 69.6
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.3e-103 380.2 283 67.8
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 2.9e-103 379.0 283 67.5
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 1.4e-102 376.7 286 68.5
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.9e-102 376.3 284 66.5
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 1.9e-102 376.3 283 68.6
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.2e-102 375.6 286 67.5
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 3.2e-102 375.6 267 71.5
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 4.2e-102 375.2 284 66.5
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 5.4e-102 374.8 314 63.4
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.6e-101 373.2 260 73.8
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 2.7e-101 372.5 282 67.7
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.7e-101 372.5 280 68.2
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 3.5e-101 372.1 286 67.5
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 3.5e-101 372.1 284 66.5
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 6.0e-101 371.3 287 65.9
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.0e-100 370.5 283 67.5
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 1.3e-100 370.2 286 66.4
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.3e-100 370.2 284 66.2
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.7e-100 369.8 286 66.4
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.7e-100 369.8 275 67.3
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 2.3e-100 369.4 286 66.1
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 5.1e-100 368.2 286 66.1
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 5.1e-100 368.2 286 65.7
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 6.6e-100 367.9 278 67.6
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 8.7e-100 367.5 286 65.7
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 8.7e-100 367.5 286 65.4
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.5e-99 366.7 286 65.4
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.5e-99 366.7 267 70.8
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 3.3e-99 365.5 286 65.7
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 3.3e-99 365.5 284 66.5
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.3e-99 365.5 283 67.5
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 4.3e-99 365.2 284 65.5
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 9.6e-99 364.0 284 65.8
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 9.6e-99 364.0 286 65.0
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 6.2e-98 361.3 268 69.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 1.4e-97 360.1 310 62.9
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.0e-97 358.6 283 63.6
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.0e-97 358.6 283 63.6
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 9.0e-97 357.5 276 65.9
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 9.0e-97 357.5 283 67.8
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.5e-96 356.7 287 63.1
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 3.4e-96 355.5 279 67.0
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 3.4e-96 355.5 279 67.0
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 7.6e-96 354.4 267 66.7
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 4.9e-95 351.7 326 58.3
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 3.2e-94 349.0 282 64.2
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.0e-92 344.0 273 65.2
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 1.3e-92 343.6 283 64.3
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.9e-91 339.7 241 69.3
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.9e-91 339.7 265 66.8
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 3.3e-91 339.0 284 61.3
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.8e-89 333.2 248 68.1
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 9.9e-88 327.4 307 58.6
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.7e-87 326.6 277 62.5
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 2.2e-87 326.2 273 63.0
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 4.2e-86 322.0 248 66.1
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 9.3e-86 320.9 257 61.9
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 7.9e-85 317.8 232 69.8
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.0e-84 317.4 284 57.7
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.1e-83 313.9 267 61.4
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 3.7e-82 308.9 214 71.0
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 3.7e-82 308.9 214 72.0
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.1e-81 307.4 258 64.7
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 4.5e-80 302.0 224 66.5
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 7.6e-80 301.2 342 51.5
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 5.5e-70 268.5 268 53.0
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 9.3e-70 267.7 250 57.2
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 6.7e-68 261.5 284 52.1
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 1.3e-66 257.3 263 54.8
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.8e-65 253.4 237 59.9
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 7.4e-59 231.5 214 54.7
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.0e-52 211.1 262 49.6
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 9.1e-49 198.0 200 59.5
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 3.5e-48 196.1 152 68.4
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 2.2e-47 193.4 248 47.2
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 2.2e-47 193.4 154 60.4
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.7e-45 186.4 153 62.1
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.2e-42 176.8 307 40.4
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 9.4e-38 161.4 101 74.3
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.0e-35 153.7 118 64.4
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.8e-34 149.8 103 71.8
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.3e-30 136.3 85 72.9
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.6e-21 107.5 191 39.8
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 6.1e-21 105.5 66 78.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.8e-20 102.1 65 73.8
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.3e-18 95.1 264 34.5
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 3.2e-17 93.2 256 33.2
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 2.0e-16 90.5 225 29.3
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.5e-16 89.7 75 65.3
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.8e-12 77.4 101 43.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.0e-12 76.3 47 76.6
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.0e-12 76.3 116 47.4


User provided reference genes

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