Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.1e-36 155.2 81 100.0
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.8e-35 152.1 81 96.3
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.3e-30 136.0 76 90.8
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 2.5e-29 131.7 76 88.2
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 3.0e-27 124.8 74 86.5
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 6.8e-27 123.6 76 81.6
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 8.9e-27 123.2 74 81.1
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.2e-26 122.9 74 83.8
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.6e-26 121.7 74 83.8
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.4e-26 121.3 75 82.7
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 3.4e-26 121.3 77 80.5
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 3.4e-26 121.3 75 82.7
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 5.7e-26 120.6 74 83.8
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 7.5e-26 120.2 74 82.4
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 7.5e-26 120.2 76 77.6
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 9.8e-26 119.8 74 83.8
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 9.8e-26 119.8 76 80.3
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 9.8e-26 119.8 74 83.8
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.8e-26 119.8 74 82.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.8e-26 119.8 74 82.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.8e-26 119.8 74 82.4
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.3e-25 119.4 74 82.4
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.3e-25 119.4 76 80.3
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.3e-25 119.4 76 80.3
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 1.3e-25 119.4 78 76.9
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.3e-25 119.4 74 82.4
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.2e-25 118.6 76 78.9
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.9e-25 118.2 74 81.1
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 3.7e-25 117.9 78 78.2
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 6.4e-25 117.1 77 77.9
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.4e-25 117.1 76 78.9
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 6.4e-25 117.1 76 78.9
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 8.3e-25 116.7 74 81.1
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 8.3e-25 116.7 74 79.7
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.1e-24 116.3 73 80.8
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.1e-24 116.3 74 78.4
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.1e-24 116.3 77 77.9
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.1e-24 116.3 74 79.7
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 1.1e-24 116.3 78 76.9
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.4e-24 115.9 77 76.6
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.8e-24 115.5 74 79.7
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.8e-24 115.5 76 78.9
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.8e-24 115.5 77 76.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.4e-24 115.2 74 78.4
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.4e-24 115.2 74 79.7
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.2e-24 114.8 78 75.6
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.2e-24 114.8 74 81.1
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.2e-24 114.8 74 81.1
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.2e-24 114.8 74 81.1
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 4.1e-24 114.4 73 79.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 4.1e-24 114.4 73 79.5
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 5.4e-24 114.0 77 76.6
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 5.4e-24 114.0 75 78.7
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 5.4e-24 114.0 74 79.7
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 5.4e-24 114.0 78 75.6
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 5.4e-24 114.0 77 76.6
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 5.4e-24 114.0 74 77.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 5.4e-24 114.0 74 78.4
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 5.4e-24 114.0 77 76.6
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 7.0e-24 113.6 77 71.4
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 7.0e-24 113.6 74 77.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 7.0e-24 113.6 74 77.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 7.0e-24 113.6 74 79.7
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 9.2e-24 113.2 74 74.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 9.2e-24 113.2 78 75.6
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 9.2e-24 113.2 78 75.6
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-23 112.8 73 78.1
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.2e-23 112.8 73 78.1
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.2e-23 112.8 73 78.1
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.2e-23 112.8 74 75.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.2e-23 112.8 74 78.4
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.2e-23 112.8 74 78.4
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.2e-23 112.8 76 75.0
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.2e-23 112.8 76 73.7
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-23 112.8 74 74.3
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 1.6e-23 112.5 74 75.7
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-23 112.5 77 76.6
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.6e-23 112.5 74 77.0
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.6e-23 112.5 74 75.7
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.6e-23 112.5 74 79.7
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.6e-23 112.5 74 77.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.0e-23 112.1 77 76.6
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.0e-23 112.1 76 78.9
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.0e-23 112.1 74 78.4
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 2.0e-23 112.1 74 75.7
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 74.3
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 73.0
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 74.3
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 74.3
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 73.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 73.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 73.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 78.4
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 77.0
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.7e-23 111.7 76 73.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 77.0
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.7e-23 111.7 74 78.4
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 3.5e-23 111.3 69 84.1
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.6e-23 110.9 74 75.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 4.6e-23 110.9 74 75.7
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.6e-23 110.9 74 77.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 4.6e-23 110.9 74 78.4
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 4.6e-23 110.9 74 78.4
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 5.9e-23 110.5 74 73.0
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 5.9e-23 110.5 76 75.0
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 7.8e-23 110.2 74 77.0
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 7.8e-23 110.2 74 74.3
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 7.8e-23 110.2 74 74.3
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.0e-22 109.8 73 76.7
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.0e-22 109.8 75 76.0
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-22 109.4 74 77.0
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-22 109.4 74 77.0
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.3e-22 109.4 74 75.7
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.3e-22 109.4 74 75.7
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.7e-22 109.0 74 71.6
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.7e-22 109.0 75 74.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 2.3e-22 108.6 77 70.1
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.3e-22 108.6 74 75.7
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 6.6e-22 107.1 79 68.4
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.1e-21 106.3 76 76.3
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.9e-21 105.5 73 71.2
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.9e-21 105.5 73 71.2
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.9e-21 105.5 73 71.2
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.3e-21 104.8 78 66.7
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 4.3e-21 104.4 73 74.0
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 9.5e-21 103.2 79 65.8
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 9.5e-21 103.2 73 74.0
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 5.2e-19 97.4 73 69.9
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.2e-18 96.3 73 71.2
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 9.8e-18 93.2 77 61.0
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.7e-17 91.3 74 64.9
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.9e-16 89.0 73 63.0
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 4.1e-16 87.8 75 58.7
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 2.7e-15 85.1 75 58.7
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.7e-14 82.4 73 64.4
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.9e-14 81.3 74 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.9e-14 81.3 74 60.8
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.6e-14 80.1 55 70.9
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.6e-14 80.1 55 70.9
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.8e-11 72.4 49 73.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 8.9e-11 70.1 51 68.6
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 2.0e-10 68.9 50 64.0
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-08 63.2 41 73.2
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 7.1e-08 60.5 71 49.3
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 3.5e-07 58.2 40 70.0


User provided reference genes

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