Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 9.6e-311 1069.3 537 100.0
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.3e-303 1043.9 561 94.7
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 2.9e-299 1031.2 534 96.4
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 3.0e-296 1021.1 533 95.1
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 3.2e-290 1001.1 534 92.7
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 1.0e-288 996.1 534 91.8
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.3e-288 995.0 534 90.8
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 2.3e-288 995.0 534 91.2
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 3.3e-287 991.1 534 91.4
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 4.3e-287 990.7 534 91.2
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 9.6e-287 989.6 534 90.8
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 9.6e-287 989.6 534 91.2
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 2.8e-286 988.0 534 91.4
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 2.8e-286 988.0 534 91.4
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 2.8e-286 988.0 534 90.4
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 4.8e-286 987.3 534 90.6
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 6.2e-286 986.9 534 91.2
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 8.1e-286 986.5 534 90.1
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 1.8e-285 985.3 534 91.0
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 2.6e-284 981.5 534 90.3
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 3.4e-284 981.1 534 90.3
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.4e-284 981.1 534 90.6
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 5.8e-284 980.3 534 90.3
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 1.7e-283 978.8 533 90.6
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 1.7e-283 978.8 534 90.1
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.7e-283 978.8 534 89.9
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 3.8e-283 977.6 534 89.5
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 3.8e-283 977.6 534 90.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 4.9e-283 977.2 534 90.1
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 4.9e-283 977.2 534 89.9
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 6.4e-283 976.9 534 89.7
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 8.4e-283 976.5 534 89.9
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 1.1e-282 976.1 534 89.5
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.1e-282 976.1 534 89.1
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 1.4e-282 975.7 534 90.1
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.4e-282 975.7 534 90.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.4e-282 975.7 534 89.1
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 1.4e-282 975.7 534 89.7
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.9e-282 975.3 534 89.9
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 2.5e-282 974.9 534 89.9
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 2.5e-282 974.9 534 89.7
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 3.2e-282 974.5 534 89.7
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 3.2e-282 974.5 534 89.1
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 4.2e-282 974.2 534 89.9
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 4.2e-282 974.2 534 89.7
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 5.5e-282 973.8 534 89.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 7.1e-282 973.4 534 89.1
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 7.1e-282 973.4 534 89.5
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 7.1e-282 973.4 533 89.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 7.1e-282 973.4 534 89.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 9.3e-282 973.0 530 90.4
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.2e-281 972.6 534 88.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 1.2e-281 972.6 534 89.1
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 2.1e-281 971.8 534 89.1
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 2.1e-281 971.8 534 89.3
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 2.7e-281 971.5 534 89.5
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 2.7e-281 971.5 534 89.5
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 2.7e-281 971.5 534 89.5
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 2.7e-281 971.5 534 89.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 2.7e-281 971.5 534 89.0
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 3.5e-281 971.1 534 88.8
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 3.5e-281 971.1 534 89.3
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 4.6e-281 970.7 534 89.0
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 6.0e-281 970.3 534 89.3
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 7.9e-281 969.9 534 89.0
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 1.0e-280 969.5 534 89.3
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 1.0e-280 969.5 534 88.2
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 1.3e-280 969.1 528 90.0
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 1.8e-280 968.8 534 88.8
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 3.0e-280 968.0 534 89.5
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 3.0e-280 968.0 534 89.0
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 5.1e-280 967.2 534 89.1
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 5.1e-280 967.2 530 90.0
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 6.7e-280 966.8 528 89.4
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 6.7e-280 966.8 534 88.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 8.7e-280 966.5 534 88.8
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.1e-279 966.1 544 88.1
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.9e-279 965.3 534 89.0
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 4.3e-279 964.1 534 88.2
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 5.7e-279 963.8 534 89.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.3e-278 962.6 527 89.6
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.8e-278 961.4 534 88.2
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 4.8e-278 960.7 534 88.0
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 1.4e-277 959.1 534 87.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 1.4e-277 959.1 534 87.6
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 1.4e-277 959.1 534 88.4
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 4.0e-277 957.6 534 89.0
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 5.3e-277 957.2 528 89.0
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 6.9e-277 956.8 534 89.0
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 6.9e-277 956.8 534 89.0
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 2.0e-276 955.3 534 87.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 4.5e-276 954.1 534 87.8
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 1.3e-275 952.6 534 87.1
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 2.9e-275 951.4 534 88.0
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 2.3e-272 941.8 534 88.0
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 3.0e-272 941.4 534 87.5
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 3.9e-272 941.0 534 85.8
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 6.3e-270 933.7 534 84.8
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.2e-268 929.5 534 85.8
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 2.6e-268 928.3 534 85.2
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 2.5e-266 921.8 534 84.6
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.4e-264 916.0 534 84.1
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.4e-264 916.0 534 83.5
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 4.5e-260 901.0 534 84.1
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 3.2e-258 894.8 534 81.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.0e-251 873.2 533 79.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.1e-249 865.5 534 78.7
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.2e-244 849.7 503 84.9
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.6e-241 838.2 503 83.9
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.5e-236 821.6 543 74.6
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 2.6e-231 805.4 438 90.2
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.6e-228 796.2 535 73.8
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 9.2e-221 770.4 534 73.6
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.7e-206 723.0 535 68.2
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.4e-205 719.2 396 88.6
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.8e-201 705.7 444 80.0
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.3e-200 702.6 539 65.3
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.9e-199 697.2 535 70.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.2e-193 680.2 534 69.1
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.2e-191 673.7 398 83.2
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.3e-187 660.2 534 66.9
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.9e-182 641.7 446 75.3
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.5e-178 630.2 354 89.0
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 3.2e-157 559.3 541 54.3
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.1e-124 448.7 268 84.0
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 2.7e-116 423.3 527 43.6
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.6e-103 380.9 212 87.3
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.2e-95 354.8 193 88.6
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.1e-87 327.4 175 89.7
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 4.3e-85 319.7 231 71.9
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.9e-65 253.8 141 87.2
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.8e-60 237.3 273 50.2
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.4e-43 181.0 98 85.7
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 2.0e-42 177.9 99 87.9
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 6.1e-39 166.4 103 75.7
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.3e-36 158.7 90 86.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.7e-36 157.1 137 59.1
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 6.3e-36 156.4 83 89.2
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.4e-35 155.2 80 92.5
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.4e-35 154.5 86 82.6
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.3e-33 148.7 91 81.3
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.2e-33 147.9 91 80.2
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.2e-31 142.1 76 89.5
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.8e-30 138.3 74 83.8
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.8e-27 128.3 66 90.9
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.7e-23 114.4 116 56.0
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.7e-20 105.1 53 96.2
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.8e-19 101.7 60 81.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 5.0e-17 93.6 51 84.3
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.5e-16 91.3 63 66.7
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.5e-16 91.3 49 85.7
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.0e-09 69.3 39 87.2
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 3.8e-09 67.4 43 74.4


User provided reference genes

Program Settings