Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 3273.8 1654 100.0
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 2335.5 1734 70.6
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 2075.1 1649 69.6
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1921.0 1757 58.2
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 1815.8 1781 54.9
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1755.3 1770 54.5
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1745.3 1772 54.2
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1732.2 1766 53.6
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1731.8 1762 53.7
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1719.1 1768 53.1
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1707.6 1978 49.7
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1705.6 1768 52.1
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1700.6 1687 55.0
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1700.3 1762 53.2
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1700.3 1765 52.2
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1699.5 1768 52.0
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1696.0 1777 51.8
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1679.1 1788 52.0
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1645.2 1780 51.3
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1634.4 1764 50.5
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1617.4 1771 50.5
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1614.4 1765 50.5
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1601.3 1774 50.4
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1593.2 1771 50.1
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1590.9 1772 50.7
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1590.9 1772 50.8
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1589.7 1774 50.1
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1588.2 1770 49.5
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1587.8 1719 51.1
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1585.9 1770 48.8
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1583.9 1761 49.9
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1582.8 1767 50.1
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1582.8 1773 48.9
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1578.1 1768 49.3
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1572.4 1777 48.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1571.6 1759 49.7
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1569.7 1760 50.1
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1564.7 1756 49.7
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1560.0 1754 49.5
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1558.5 1762 49.3
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1558.1 1771 49.3
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1557.7 1760 49.1
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1552.7 1764 49.2
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1549.3 1759 49.6
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1545.0 1767 49.6
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1543.9 1821 46.7
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1537.7 1755 49.1
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1535.8 1526 55.0
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1535.4 1759 48.9
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1533.1 1758 48.7
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1530.4 1752 49.1
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1530.4 1763 49.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1528.1 1759 49.7
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1521.5 1781 48.3
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1521.5 1559 53.2
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1520.4 1654 50.9
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1504.2 1752 48.9
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1499.6 1773 47.0
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1495.3 1750 47.9
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1492.6 1777 48.1
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1486.1 1741 47.7
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1484.5 1811 47.3
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1482.2 1353 58.9
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1473.8 1762 46.9
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1468.0 1769 48.3
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1457.6 1756 47.0
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1448.3 1741 47.2
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1446.8 1761 46.5
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1423.7 1769 46.8
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1367.8 1455 50.7
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1334.7 1777 45.2
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1327.8 1581 47.8
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1306.2 1606 46.1
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1298.1 1764 43.2
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1175.6 1184 55.6
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1171.8 1787 39.3
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1100.9 1352 45.8
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1088.9 1341 46.1
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.6e-292 1009.2 1368 44.2
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 2.1e-287 993.4 1059 53.4
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.7e-278 963.8 995 53.7
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-265 921.0 953 53.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 4.6e-263 912.5 1828 33.4
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.0e-262 911.4 1301 41.2
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.9e-249 866.7 1298 42.2
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 7.1e-240 835.5 1434 38.0
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.7e-239 833.6 1026 47.7
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.5e-225 785.8 805 53.9
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 3.2e-208 730.3 810 52.6
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 6.3e-204 716.1 914 46.7
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 9.5e-184 649.0 738 50.9
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.3e-164 585.5 464 66.4
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 3.5e-146 524.2 1434 28.8
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 8.1e-143 513.1 408 64.5
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 4.0e-142 510.8 411 64.0
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.1e-137 493.8 410 63.7
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.5e-128 465.7 441 58.7
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.2e-117 429.5 338 65.4
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 2.3e-113 415.2 312 68.3
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 5.7e-104 384.0 482 44.2
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.1e-102 379.8 312 66.0
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.1e-102 378.3 552 39.7
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 2.5e-99 368.6 477 47.6
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 5.5e-99 367.5 342 57.6
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.0e-97 363.2 645 36.9
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.2e-95 355.5 284 65.5
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 2.2e-87 328.9 366 47.5
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 4.5e-85 321.2 374 46.3
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 2.7e-77 295.4 181 79.0
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.5e-75 287.0 412 40.8
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 8.0e-74 283.9 180 78.3
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 6.8e-73 280.8 387 39.8
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 3.7e-71 275.0 391 40.7
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.9e-71 274.6 500 33.6
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.2e-69 270.0 214 63.1
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 2.3e-68 265.8 263 53.2
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 3.9e-68 265.0 346 48.0
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 4.6e-61 241.5 501 33.7
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 2.1e-58 232.6 397 36.8
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.4e-57 229.9 177 61.0
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 4.9e-47 194.9 283 38.2
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 5.4e-46 191.4 137 66.4
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.2e-45 190.3 108 81.5
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 1.0e-44 187.2 112 80.4
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 1.7e-44 186.4 366 35.8
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.1e-43 183.7 396 33.3
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 7.3e-43 181.0 889 23.7
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 4.0e-41 175.3 148 54.1
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 6.9e-41 174.5 142 60.6
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 9.9e-40 170.6 193 51.8
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.1e-38 167.2 487 27.7
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.6e-34 152.1 420 29.0
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 6.4e-31 141.4 154 43.5
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 2.1e-29 136.3 162 48.1
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.8e-28 133.3 179 44.1
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 8.7e-28 131.0 228 33.3
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.1e-26 126.3 118 57.6
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 6.2e-26 124.8 144 47.2
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 2.2e-23 116.3 181 37.0
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 4.2e-22 112.1 85 64.7
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 7.1e-22 111.3 85 64.7
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.6e-21 110.2 124 49.2
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.5e-21 109.0 55 94.5
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.1e-20 105.1 187 37.4
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.3e-19 102.4 166 36.1
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.3e-17 95.1 74 62.2
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.2e-13 84.0 174 33.3
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-11 76.6 70 55.7
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 4.3e-11 75.5 70 54.3
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.1e-10 73.2 144 37.5
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 8.2e-10 71.2 179 29.1
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 3.1e-09 69.3 144 36.1
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 4.1e-09 68.9 64 54.7
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 9.0e-09 67.8 197 28.4
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 1.5e-08 67.0 179 26.8
BcaNung07323 Brassica carinata HOM05D003893 ORTHO05D005167 7.6e-08 64.7 63 54.0
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 1.0e-07 64.3 63 47.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.9e-07 62.8 218 24.3
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 5.5e-06 58.5 49 59.2
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 5.5e-06 58.5 49 59.2
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 5.5e-06 58.5 49 59.2
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 9.3e-06 57.8 113 33.6


User provided reference genes

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