Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018799 Chenopodium quinoa HOM05D002005 ORTHO05D003757 0.0e+00 1187.2 715 100.0
AUR62007203 Chenopodium quinoa HOM05D002005 ORTHO05D003757 2.7e-305 1051.6 728 87.8
Prupe.7G025700 Prunus persica HOM05D002005 ORTHO05D003757 3.5e-42 177.6 785 28.8
FAN26G2169 Fragaria x ananassa HOM05D002005 ORTHO05D003757 5.1e-41 173.7 462 34.6
FAN19G0929 Fragaria x ananassa HOM05D002005 ORTHO05D003757 1.9e-40 171.8 459 35.1
FvH4_1g29420 Fragaria vesca HOM05D002005 ORTHO05D003757 2.1e-39 168.3 466 34.8
FAN28G0247 Fragaria x ananassa HOM05D002005 ORTHO05D003757 2.8e-39 167.9 461 34.5
Dinv37045 Davidia involucrata HOM05D002005 ORTHO05D003757 4.7e-39 167.2 412 33.7
Manes.08G155700 Manihot esculenta HOM05D002005 ORTHO05D003757 4.0e-38 164.1 440 33.0
Sc01g0007860 Simmondsia chinensis HOM05D002005 ORTHO05D003757 2.6e-37 161.4 697 29.4
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 4.4e-37 160.6 395 34.2
Nitab4.5_0007999g0010 Nicotiana tabacum HOM05D002005 ORTHO05D003757 5.8e-37 160.2 385 34.5
VMungo1383G0221 Vigna mungo HOM05D002005 ORTHO05D003757 7.5e-37 159.8 486 35.6
Sabra19G0054900 Salix brachista HOM05D002005 ORTHO05D003757 3.7e-36 157.5 428 33.2
CSS0037844 Camellia sinensis var. sinensis HOM05D002005 ORTHO05D003757 4.9e-36 157.1 428 33.6
SalBow6G5301 Salvia bowleyana HOM05D002005 ORTHO05D003757 4.9e-36 157.1 415 34.0
SalBow6G5969 Salvia bowleyana HOM05D002005 ORTHO05D003757 4.9e-36 157.1 415 34.0
Oeu044220.1 Olea europaea HOM05D002005 ORTHO05D003757 6.4e-36 156.8 447 31.8
RhsimUnG0023200 Rhododendron simsii HOM05D002005 ORTHO05D003757 6.4e-36 156.8 801 28.6
MD05G1057800 Malus domestica HOM05D002005 ORTHO05D003757 8.3e-36 156.4 404 33.7
Potri.019G044500 Populus trichocarpa HOM05D002005 ORTHO05D003757 3.2e-35 154.5 424 32.3
Cc00_g08730 Coffea canephora HOM05D002005 ORTHO05D003757 5.4e-35 153.7 433 32.8
Actinidia37843 Actinidia chinensis HOM05D002005 ORTHO05D003757 1.2e-34 152.5 783 28.0
PGR042G3731 Punica granatum HOM05D002005 ORTHO05D003757 2.7e-34 151.4 432 32.6
Prupe.8G087600 Prunus persica HOM05D002005 ORTHO05D003757 3.5e-34 151.0 778 26.3
FvH4_2g10091 Fragaria vesca HOM05D002005 ORTHO05D003757 7.8e-34 149.8 376 36.2
Lj1P1075T62 Lonicera japonica HOM05D002005 ORTHO05D003757 7.8e-34 149.8 753 29.1
ClCG09G013260 Citrullus lanatus HOM05D002005 ORTHO05D003757 5.1e-33 147.1 464 30.4
arahy.Tifrunner.gnm1.ann1.M37KEN Arachis hypogaea HOM05D002005 ORTHO05D003757 6.6e-33 146.7 422 32.9
Migut.J01577 Erythranthe guttata HOM05D002005 ORTHO05D003757 8.6e-33 146.4 422 30.8
Peaxi162Scf00153g01023 Petunia axillaris HOM05D002005 ORTHO05D003757 1.1e-32 146.0 449 30.7
Nitab4.5_0000123g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 2.5e-32 144.8 374 33.4
RcHm_v2.0_Chr3g0495491 Rosa chinensis HOM05D002005 ORTHO05D003757 2.5e-32 144.8 763 27.1
Peaxi162Scf00003g05364 Petunia axillaris HOM05D002005 ORTHO05D003757 3.3e-32 144.4 382 33.5
arahy.Tifrunner.gnm1.ann1.QNMS29 Arachis hypogaea HOM05D002005 ORTHO05D003757 4.3e-32 144.1 427 31.4
Duzib177G0589 Durio zibethinus HOM05D002005 ORTHO05D003757 4.3e-32 144.1 463 31.5
TWI34G0003 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 4.3e-32 144.1 672 29.0
Cfa019886 Carpinus fangiana HOM05D002005 ORTHO05D003757 7.3e-32 143.3 800 28.2
Manes.09G134400 Manihot esculenta HOM05D002005 ORTHO05D003757 9.5e-32 142.9 416 33.7
Glyma.19G121300 Glycine max HOM05D002005 ORTHO05D003757 1.6e-31 142.1 791 28.2
Psat3g084320 Pisum sativum HOM05D002005 ORTHO05D003757 1.6e-31 142.1 466 31.1
Glyma.03G004800 Glycine max HOM05D002005 ORTHO05D003757 2.8e-31 141.4 808 28.0
Aqoxy3G00499 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 8.1e-31 139.8 369 33.3
Potri.013G068800 Populus trichocarpa HOM05D002005 ORTHO05D003757 1.4e-30 139.0 430 30.2
Cpa.g.sc73.39 Carica papaya HOM05D002005 ORTHO05D003757 1.8e-30 138.7 803 28.0
Sed0005780 Sechium edule HOM05D002005 ORTHO05D003757 1.8e-30 138.7 446 31.6
MSTRG.19759 Avicennia marina HOM05D002005 ORTHO05D003757 2.4e-30 138.3 409 31.5
RcHm_v2.0_Chr6g0267051 Rosa chinensis HOM05D002005 ORTHO05D003757 2.4e-30 138.3 394 33.8
unitig_21.g20665 Utricularia gibba HOM05D002005 ORTHO05D003757 3.1e-30 137.9 475 32.4
DCAR_020635 Daucus carota HOM05D002005 ORTHO05D003757 4.0e-30 137.5 420 31.7
FAN24G1358 Fragaria x ananassa HOM05D002005 ORTHO05D003757 5.2e-30 137.1 364 35.7
Sopen10g028680 Solanum pennellii HOM05D002005 ORTHO05D003757 6.8e-30 136.7 395 32.4
FAN20G0782 Fragaria x ananassa HOM05D002005 ORTHO05D003757 1.5e-29 135.6 751 26.5
TWI32G1337 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 1.5e-29 135.6 669 28.4
PGSC0003DMG400019177 Solanum tuberosum HOM05D002005 ORTHO05D003757 2.0e-29 135.2 379 33.0
FAN15G1233 Fragaria x ananassa HOM05D002005 ORTHO05D003757 2.6e-29 134.8 387 33.6
Solyc10g076650.3 Solanum lycopersicum HOM05D002005 ORTHO05D003757 2.6e-29 134.8 371 32.6
Lalb_Chr14g0365081 Lupinus albus HOM05D002005 ORTHO05D003757 1.7e-28 132.1 677 28.2
Haze_20366 Corylus avellana HOM05D002005 ORTHO05D003757 2.2e-28 131.7 801 28.0
FAN27G2381 Fragaria x ananassa HOM05D002005 ORTHO05D003757 2.2e-28 131.7 750 26.3
Gohir.D11G237400 Gossypium hirsutum HOM05D002005 ORTHO05D003757 2.2e-28 131.7 423 31.9
Carub.0006s1612 Capsella rubella HOM05D002005 ORTHO05D003757 2.9e-28 131.3 437 30.0
Medtr7g087490 Medicago truncatula HOM05D002005 ORTHO05D003757 2.9e-28 131.3 492 28.9
SGA_v2.0_scaffold66G22332 Striga asiatica HOM05D002005 ORTHO05D003757 3.8e-28 131.0 419 31.0
TPR.G23643 Trifolium pratense HOM05D002005 ORTHO05D003757 6.4e-28 130.2 435 31.0
Gorai.007G250800 Gossypium raimondii HOM05D002005 ORTHO05D003757 8.4e-28 129.8 423 31.7
Ca_03430_v3 Cicer arietinum L. HOM05D002005 ORTHO05D003757 1.1e-27 129.4 795 25.0
Oeu023030.1 Olea europaea HOM05D002005 ORTHO05D003757 1.1e-27 129.4 420 30.0
QL07p015943 Quercus lobata HOM05D002005 ORTHO05D003757 1.9e-27 128.6 800 27.5
Phvul.001G101800 Phaseolus vulgaris HOM05D002005 ORTHO05D003757 2.4e-27 128.3 792 27.8
Sc22g0002340 Simmondsia chinensis HOM05D002005 ORTHO05D003757 2.4e-27 128.3 707 27.7
ClCG04G004830 Citrullus lanatus HOM05D002005 ORTHO05D003757 3.2e-27 127.9 455 29.5
CsaV3_4G031680 Cucumis sativus L. HOM05D002005 ORTHO05D003757 3.2e-27 127.9 441 29.7
TAR623G1062 Trochodendron aralioides HOM05D002005 ORTHO05D003757 3.2e-27 127.9 664 28.5
THA.LOC104802888 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 7.1e-27 126.7 493 33.3
Atru.chr2.1605 Acer truncatum HOM05D002005 ORTHO05D003757 9.2e-27 126.3 437 31.1
CiPaw.10G044600 Carya illinoinensis HOM05D002005 ORTHO05D003757 1.6e-26 125.6 474 28.1
SalBow1G2425 Salvia bowleyana HOM05D002005 ORTHO05D003757 1.6e-26 125.6 375 34.4
PGSC0003DMG400028204 Solanum tuberosum HOM05D002005 ORTHO05D003757 1.6e-26 125.6 485 28.5
CiPaw.09G053000 Carya illinoinensis HOM05D002005 ORTHO05D003757 2.1e-26 125.2 462 29.4
Nitab4.5_0000062g0420 Nicotiana tabacum HOM05D002005 ORTHO05D003757 2.1e-26 125.2 517 27.5
MSTRG.6275 Avicennia marina HOM05D002005 ORTHO05D003757 2.7e-26 124.8 485 29.1
Sp6g26360 Schrenkiella parvula HOM05D002005 ORTHO05D003757 3.5e-26 124.4 431 30.4
Gohir.A13G097000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 4.6e-26 124.0 435 28.7
CANSAT78G2106 Cannabis sativa HOM05D002005 ORTHO05D003757 6.0e-26 123.6 817 25.7
Nitab4.5_0003808g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 6.0e-26 123.6 483 26.7
PSO532G0028 Papaver somniferum HOM05D002005 ORTHO05D003757 7.8e-26 123.2 373 31.9
Aa31LG11G11930 Aethionema arabicum HOM05D002005 ORTHO05D003757 1.3e-25 122.5 426 30.8
Gohir.D13G102100 Gossypium hirsutum HOM05D002005 ORTHO05D003757 1.7e-25 122.1 435 29.2
MBI19_g06602_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 2.3e-25 121.7 404 31.7
MD12G1015000 Malus domestica HOM05D002005 ORTHO05D003757 3.9e-25 120.9 883 25.0
SalBow1G6156 Salvia bowleyana HOM05D002005 ORTHO05D003757 5.1e-25 120.6 395 32.9
Nn7g38016 Nelumbo nucifera HOM05D002005 ORTHO05D003757 8.7e-25 119.8 685 27.4
Sopen10g028260 Solanum pennellii HOM05D002005 ORTHO05D003757 8.7e-25 119.8 357 30.8
Thhalv10012439m.g Eutrema salsugineum HOM05D002005 ORTHO05D003757 1.5e-24 119.0 428 29.4
Gorai.013G114300 Gossypium raimondii HOM05D002005 ORTHO05D003757 1.5e-24 119.0 436 29.1
MSTRG.10764 Avicennia marina HOM05D002005 ORTHO05D003757 1.9e-24 118.6 469 28.6
A10p21570 Brassica napus HOM05D002005 ORTHO05D003757 4.3e-24 117.5 403 31.3
MELO3C008875.2 Cucumis melo HOM05D002005 ORTHO05D003757 5.6e-24 117.1 453 28.7
GSVIVG01029896001 Vitis vinifera HOM05D002005 ORTHO05D003757 3.6e-23 114.4 760 25.8
BraA10t44218Z Brassica rapa HOM05D002005 ORTHO05D003757 4.8e-23 114.0 391 30.4
Sed0026327 Sechium edule HOM05D002005 ORTHO05D003757 4.8e-23 114.0 426 30.5
CARHR195210 Cardamine hirsuta HOM05D002005 ORTHO05D003757 6.2e-23 113.6 434 27.9
PSO801G0543 Papaver somniferum HOM05D002005 ORTHO05D003757 6.2e-23 113.6 377 31.8
Duzib106G2027 Durio zibethinus HOM05D002005 ORTHO05D003757 1.1e-22 112.8 794 27.3
PSO339G2450 Papaver somniferum HOM05D002005 ORTHO05D003757 1.4e-22 112.5 375 31.5
AL1G51410 Arabidopsis lyrata HOM05D002005 ORTHO05D003757 2.4e-22 111.7 510 29.6
AT5G17910 Arabidopsis thaliana HOM05D002005 ORTHO05D003757 3.1e-22 111.3 430 27.4
ECA236G4805 Erigeron canadensis HOM05D002005 ORTHO05D003757 4.0e-22 110.9 377 30.0
Sopen10g031700 Solanum pennellii HOM05D002005 ORTHO05D003757 4.0e-22 110.9 856 26.6
Nn2g11384 Nelumbo nucifera HOM05D002005 ORTHO05D003757 6.9e-22 110.2 430 30.0
Solyc10g081200.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 6.9e-22 110.2 861 26.5
Migut.N01846 Erythranthe guttata HOM05D002005 ORTHO05D003757 9.0e-22 109.8 366 30.3
Eucgr.A02165 Eucalyptus grandis HOM05D002005 ORTHO05D003757 1.2e-21 109.4 841 25.6
MD14G1012900 Malus domestica HOM05D002005 ORTHO05D003757 1.5e-21 109.0 870 23.4
AUR62042367 Chenopodium quinoa HOM05D002005 ORTHO05D003757 5.8e-21 107.1 232 44.4
Aqoxy4G02664 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 7.6e-21 106.7 387 29.2
C09p59080 Brassica napus HOM05D002005 ORTHO05D003757 9.9e-21 106.3 398 30.2
SGA_v2.0_scaffold240G44144 Striga asiatica HOM05D002005 ORTHO05D003757 1.3e-20 105.9 376 31.1
Thecc.05G236600 Theobroma cacao HOM05D002005 ORTHO05D003757 1.7e-20 105.5 830 25.8
BraA03t10181Z Brassica rapa HOM05D002005 ORTHO05D003757 2.2e-20 105.1 480 30.0
Hund15172 Selenicereus undatus HOM05D002005 ORTHO05D003757 2.2e-20 105.1 179 41.9
Ah.13g070760 Amaranthus hybridus HOM05D002005 ORTHO05D003757 3.8e-20 104.4 507 25.6
BcaB01g04923 Brassica carinata HOM05D002005 ORTHO05D003757 4.9e-20 104.0 418 29.2
PSO210G7347 Papaver somniferum HOM05D002005 ORTHO05D003757 4.9e-20 104.0 459 29.8
BcaB01g05164 Brassica carinata HOM05D002005 ORTHO05D003757 8.4e-20 103.2 478 30.5
BolC3t13486H Brassica oleracea HOM05D002005 ORTHO05D003757 8.4e-20 103.2 478 30.5
A03p08550 Brassica napus HOM05D002005 ORTHO05D003757 1.4e-19 102.4 485 29.7
C03p09980 Brassica napus HOM05D002005 ORTHO05D003757 1.9e-19 102.1 476 30.5
PSO210G3936 Papaver somniferum HOM05D002005 ORTHO05D003757 1.9e-19 102.1 460 29.1
HPP92_005921 Vanilla planifolia HOM05D002005 ORTHO05D003757 7.1e-19 100.1 399 28.3
MBI13_g15011_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 9.3e-19 99.8 407 29.2
CDE08G0232 Ceratophyllum demersum HOM05D002005 ORTHO05D003757 1.2e-18 99.4 380 27.6
Lsat_1_v5_gn_8_85341 Lactuca sativa HOM05D002005 ORTHO05D003757 2.1e-18 98.6 415 27.0
Duzib128G1593 Durio zibethinus HOM05D002005 ORTHO05D003757 4.6e-18 97.4 794 26.3
Ciclev10030490m.g Citrus clementina HOM05D002005 ORTHO05D003757 6.0e-18 97.1 568 25.9
AUR62037108 Chenopodium quinoa HOM05D002005 ORTHO05D003757 1.0e-17 96.3 232 38.8
PSO541G2770 Papaver somniferum HOM05D002005 ORTHO05D003757 1.3e-17 95.9 386 28.5
Gohir.A13G160000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 1.7e-17 95.5 449 27.6
THA.LOC104820809 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 2.3e-17 95.1 732 28.0
BcaB08g36725 Brassica carinata HOM05D002005 ORTHO05D003757 6.6e-17 93.6 761 25.6
CAN.G128.110 Capsicum annuum HOM05D002005 ORTHO05D003757 6.6e-17 93.6 887 24.4
Solyc10g076995.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 1.1e-16 92.8 263 31.6
ATR0307G088 Amborella trichopoda HOM05D002005 ORTHO05D003757 1.5e-16 92.4 407 28.7
BcaC04g18741 Brassica carinata HOM05D002005 ORTHO05D003757 2.5e-16 91.7 728 23.9
BolC9t58754H Brassica oleracea HOM05D002005 ORTHO05D003757 2.5e-16 91.7 728 23.9
HanXRQChr00c0297g0573161 Helianthus annuus HOM05D002005 ORTHO05D003757 4.3e-16 90.9 379 30.3
Dinv14553 Davidia involucrata HOM05D002005 ORTHO05D003757 1.6e-15 89.0 80 57.5
Duzib128G1239 Durio zibethinus HOM05D002005 ORTHO05D003757 2.8e-15 88.2 420 27.4
Gorai.013G197500 Gossypium raimondii HOM05D002005 ORTHO05D003757 8.1e-15 86.7 674 25.5
Lj1g0005282 Lotus japonicus HOM05D002005 ORTHO05D003757 1.1e-14 86.3 794 24.7
Gohir.D13G165200 Gossypium hirsutum HOM05D002005 ORTHO05D003757 2.4e-14 85.1 690 25.8
Hma1.2p1_1291F.1_g273630 Hydrangea macrophylla HOM05D002005 ORTHO05D003757 3.1e-14 84.7 720 24.2
C09p59060 Brassica napus HOM05D002005 ORTHO05D003757 5.3e-14 84.0 775 24.4
PSO339G0059 Papaver somniferum HOM05D002005 ORTHO05D003757 9.0e-14 83.2 287 31.7
PSO384G2823 Papaver somniferum HOM05D002005 ORTHO05D003757 2.9e-12 78.2 325 28.3
EL10Ac9g21403 Beta vulgaris HOM05D002005 ORTHO05D003757 4.9e-12 77.4 253 35.2
CDE09G1138 Ceratophyllum demersum HOM05D002005 ORTHO05D003757 4.9e-12 77.4 195 32.3
Oeu060743.1 Olea europaea HOM05D002005 ORTHO05D003757 1.4e-11 75.9 361 27.7
ECA247G0685 Erigeron canadensis HOM05D002005 ORTHO05D003757 1.9e-11 75.5 353 26.9
Solyc10g077000.3 Solanum lycopersicum HOM05D002005 ORTHO05D003757 1.2e-10 72.8 80 52.5
DCAR_013506 Daucus carota HOM05D002005 ORTHO05D003757 2.1e-10 72.0 237 29.5
HPP92_008478 Vanilla planifolia HOM05D002005 ORTHO05D003757 2.7e-10 71.6 171 33.9
QL01p026846 Quercus lobata HOM05D002005 ORTHO05D003757 3.0e-09 68.2 355 27.0
TAR369G1119 Trochodendron aralioides HOM05D002005 ORTHO05D003757 1.9e-08 65.5 71 52.1
Lsat_1_v5_gn_9_30121 Lactuca sativa HOM05D002005 ORTHO05D003757 3.3e-08 64.7 435 23.7
Cpa.g.sc112.55 Carica papaya HOM05D002005 ORTHO05D006330 5.6e-08 63.9 92 46.7
Os01g0812050 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 2.8e-07 61.6 480 24.4
HanXRQChr10g0293151 Helianthus annuus HOM05D002005 ORTHO05D003757 6.2e-07 60.5 331 26.6
Zm00001eb150100 Zea mays HOM05D002005 ORTHO05D003757 8.1e-07 60.1 478 25.5
TWI31G1266 Tripterygium wilfordii HOM05D002005 ORTHO05D006330 1.4e-06 59.3 66 50.0
RcHm_v2.0_Chr5g0068611 Rosa chinensis HOM05D002005 ORTHO05D006330 4.0e-06 57.8 65 49.2
Rhsim13G0072200 Rhododendron simsii HOM05D002005 ORTHO05D006330 5.3e-06 57.4 118 39.8
Prupe.6G060900 Prunus persica HOM05D002005 ORTHO05D006330 6.9e-06 57.0 354 27.4
Ca_05585_v3 Cicer arietinum L. HOM05D002005 ORTHO05D006330 9.0e-06 56.6 104 39.4
FAN16G2282 Fragaria x ananassa HOM05D002005 ORTHO05D006330 9.0e-06 56.6 65 50.8


User provided reference genes

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