Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-117 425.6 234 100.0
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 5.2e-112 407.9 234 96.2
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.4e-77 293.5 233 74.7
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.7e-70 270.0 229 72.1
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 2.4e-64 249.6 238 64.3
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 3.9e-59 232.3 223 64.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 2.8e-57 226.1 233 58.4
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 3.7e-57 225.7 237 58.2
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.8e-56 223.4 221 60.6
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.1e-56 222.2 221 60.2
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.3e-56 221.9 224 58.5
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 6.9e-56 221.5 235 57.4
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 6.9e-56 221.5 218 59.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 6.9e-56 221.5 216 57.9
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.0e-56 221.1 227 58.1
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 2.6e-55 219.5 227 58.1
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 5.9e-55 218.4 227 57.3
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.0e-54 217.6 227 56.4
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.7e-54 216.9 220 59.5
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.8e-54 215.7 217 58.5
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.8e-54 215.7 235 57.0
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 6.5e-54 214.9 227 59.0
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.1e-53 214.2 227 58.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.9e-53 213.4 235 54.9
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.9e-53 213.4 233 54.9
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 2.5e-53 213.0 237 54.9
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 2.5e-53 213.0 236 55.9
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 3.2e-53 212.6 232 57.3
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 5.5e-53 211.8 236 55.9
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 5.5e-53 211.8 257 53.3
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 7.2e-53 211.5 232 56.9
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 3.6e-52 209.1 233 56.7
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 6.1e-52 208.4 239 53.1
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.3e-51 207.2 223 54.3
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 3.0e-51 206.1 229 56.8
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 3.9e-51 205.7 236 54.2
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 3.9e-51 205.7 220 57.7
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.1e-50 204.1 224 57.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.5e-50 203.0 217 56.7
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.3e-50 202.6 224 56.7
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.3e-50 202.6 218 57.8
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 4.3e-50 202.2 215 56.7
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 5.7e-50 201.8 217 56.7
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 5.7e-50 201.8 269 50.9
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 2.2e-49 199.9 226 53.5
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 2.2e-49 199.9 222 55.9
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.2e-49 199.9 228 56.1
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 6.3e-49 198.4 225 54.7
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 6.3e-49 198.4 224 54.0
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.1e-48 197.6 232 55.2
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.8e-48 196.8 239 53.6
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 2.4e-48 196.4 221 53.8
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.1e-48 196.1 223 54.7
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 3.1e-48 196.1 263 52.1
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 4.1e-48 195.7 225 56.4
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 5.3e-48 195.3 212 57.1
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 6.9e-48 194.9 236 53.0
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.2e-47 194.1 231 51.9
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.2e-47 194.1 218 55.5
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.5e-47 193.7 280 48.9
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.0e-47 193.4 215 55.8
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.6e-47 193.0 232 52.2
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 4.5e-47 192.2 215 54.0
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.0e-46 191.0 249 49.8
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.3e-46 190.7 223 54.3
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.7e-46 190.3 218 55.5
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.8e-46 189.1 200 57.5
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-45 187.6 218 54.6
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.4e-45 187.2 230 53.5
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 2.5e-45 186.4 210 54.3
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.2e-45 186.0 228 52.6
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 9.4e-45 184.5 242 51.7
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.2e-44 184.1 212 51.4
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 2.1e-44 183.3 231 54.1
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 2.1e-44 183.3 218 52.8
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 2.7e-44 183.0 214 54.7
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 2.7e-44 183.0 230 51.3
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 6.1e-44 181.8 224 50.9
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 7.9e-44 181.4 218 53.2
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.4e-43 180.6 228 51.3
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-43 180.6 227 50.7
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 3.0e-43 179.5 218 52.8
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 3.0e-43 179.5 218 52.8
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 8.8e-43 177.9 216 49.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.6e-42 176.4 216 52.8
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 5.7e-42 175.3 239 49.4
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 7.4e-42 174.9 217 49.8
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 7.4e-42 174.9 218 50.0
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 7.4e-42 174.9 235 47.2
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.3e-41 174.1 227 50.2
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.2e-41 173.3 222 49.1
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.1e-40 171.0 216 52.3
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 2.4e-40 169.9 207 55.1
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 4.1e-40 169.1 222 48.2
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 5.3e-40 168.7 215 50.7
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 6.9e-40 168.3 224 50.4
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 6.9e-40 168.3 209 49.8
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.2e-39 167.5 229 50.2
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.2e-39 167.5 336 38.1
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.0e-39 166.8 212 50.9
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.5e-39 165.6 216 47.7
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.1e-37 161.0 188 53.2
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.1e-37 161.0 188 53.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.1e-37 161.0 229 48.9
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.9e-37 160.2 191 53.9
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.9e-37 160.2 231 46.8
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.6e-36 157.1 220 46.8
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.6e-36 157.1 220 46.8
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 3.6e-36 156.0 222 47.3
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 3.6e-36 156.0 222 47.3
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 3.6e-36 156.0 222 47.3
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.0e-35 154.5 218 47.7
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.4e-35 154.1 241 43.2
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.4e-35 154.1 241 43.2
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 1.8e-35 153.7 224 46.9
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 9.7e-34 147.9 219 43.4
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.1e-32 144.4 218 45.9
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.1e-32 144.4 218 45.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.8e-32 143.7 216 45.8
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.3e-32 142.1 234 44.4
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.6e-31 140.6 192 47.9
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 5.2e-27 125.6 216 40.3
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.3e-26 122.9 217 42.9
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 3.7e-25 119.4 163 50.9
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.1e-24 117.9 149 54.4
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 7.0e-24 115.2 82 72.0
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.6e-23 114.0 199 43.2
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.5e-23 112.5 159 47.2
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 4.5e-23 112.5 161 49.7
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.3e-22 110.9 307 33.2
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.1e-21 107.8 206 38.8
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.2e-20 104.4 242 38.8
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 8.0e-20 101.7 156 49.4
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.4e-19 100.9 124 53.2
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 6.5e-14 82.0 144 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 7.2e-13 78.6 82 52.4
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.4e-11 74.3 95 50.5
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.2e-11 72.4 69 65.2
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 4.9e-09 65.9 39 79.5
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 1.4e-08 64.3 53 58.5
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 1.4e-08 64.3 53 58.5
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.4e-08 63.5 77 55.8
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.4e-08 63.5 79 51.9
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 4.1e-08 62.8 152 36.8
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.0e-06 58.2 41 75.6
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.3e-06 57.8 41 75.6
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 3.8e-06 56.2 111 41.4


User provided reference genes

Program Settings