Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.6e-149 532.7 264 100.0
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.2e-133 479.9 366 70.8
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.4e-126 456.4 264 84.1
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.8e-116 422.9 265 78.1
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 9.7e-115 417.2 248 82.3
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.7e-114 416.4 258 78.7
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 2.2e-114 416.0 264 76.9
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.2e-114 416.0 265 75.8
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 2.8e-114 415.6 269 76.2
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.7e-114 415.2 265 75.8
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 4.8e-114 414.8 257 77.8
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 2.4e-113 412.5 266 75.6
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 2.4e-113 412.5 263 77.9
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 4.1e-113 411.8 263 74.9
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.6e-112 409.1 258 76.7
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 2.6e-112 409.1 264 74.6
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 4.5e-112 408.3 268 77.2
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 7.7e-112 407.5 265 76.2
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.0e-111 407.1 259 75.7
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.7e-111 406.4 268 74.6
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.9e-111 405.6 264 73.9
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 3.8e-111 405.2 258 76.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 5.0e-111 404.8 264 75.0
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 5.0e-111 404.8 265 75.5
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 6.5e-111 404.4 267 75.3
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 8.5e-111 404.1 263 74.5
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 2.5e-110 402.5 266 75.9
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 2.5e-110 402.5 264 73.5
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 7.2e-110 401.0 266 73.7
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 9.4e-110 400.6 264 73.1
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.6e-109 399.8 261 73.2
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.1e-109 399.4 255 75.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 6.1e-109 397.9 265 74.0
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 7.9e-109 397.5 264 73.5
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.8e-108 396.4 265 74.7
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 2.3e-108 396.0 262 72.1
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 2.3e-108 396.0 264 73.1
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 3.0e-108 395.6 255 73.7
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 3.0e-108 395.6 265 74.7
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 3.0e-108 395.6 264 73.1
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.7e-108 394.4 254 74.0
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 8.8e-108 394.0 261 72.0
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.1e-107 393.7 261 73.9
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.1e-107 393.7 264 71.2
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.1e-107 393.7 256 74.2
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.5e-107 393.3 268 74.3
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 2.0e-107 392.9 266 71.1
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 3.3e-107 392.1 264 72.7
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 3.3e-107 392.1 265 72.8
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 5.7e-107 391.3 256 74.2
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 7.4e-107 391.0 259 72.6
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 9.7e-107 390.6 255 74.5
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 1.7e-106 389.8 254 73.2
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.7e-106 389.8 265 72.5
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 2.2e-106 389.4 258 72.1
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.7e-106 388.7 256 73.4
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 4.8e-106 388.3 265 71.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 4.8e-106 388.3 255 74.1
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 1.4e-105 386.7 268 72.4
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.8e-105 386.3 254 73.6
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 1.8e-105 386.3 257 72.4
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.1e-105 385.6 266 72.2
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 9.1e-105 384.0 259 70.7
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.2e-104 383.6 259 72.2
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.0e-104 382.9 255 72.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.0e-104 382.9 255 72.5
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.0e-103 380.6 255 71.8
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 2.2e-103 379.4 258 72.5
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 3.2e-102 375.6 263 70.7
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 4.2e-102 375.2 255 71.0
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 4.2e-102 375.2 264 70.1
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 7.2e-102 374.4 258 72.1
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.1e-101 372.9 258 72.1
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 3.6e-101 372.1 258 70.5
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 1.0e-100 370.5 288 66.7
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.8e-100 369.8 258 71.7
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 2.3e-100 369.4 258 71.7
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 4.0e-100 368.6 265 66.8
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.5e-99 366.7 266 66.5
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 2.0e-99 366.3 279 64.9
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 7.5e-99 364.4 267 71.5
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 3.7e-98 362.1 258 69.8
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 2.0e-96 356.3 289 64.0
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.0e-95 351.7 210 80.0
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.9e-94 349.7 263 66.9
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 7.2e-94 347.8 256 64.1
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-93 347.1 256 67.2
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 8.3e-90 334.3 270 60.7
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 2.1e-85 319.7 258 66.3
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.7e-79 300.1 224 66.1
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 2.3e-76 289.7 234 59.0
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 3.0e-76 289.3 241 56.4
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 6.4e-74 281.6 245 55.1
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 5.0e-71 271.9 175 72.0
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.5e-70 269.6 236 52.1
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 5.4e-65 251.9 227 53.7
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.4e-65 251.9 264 50.8
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 3.3e-62 242.7 238 49.2
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.6e-61 240.4 116 98.3
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 4.7e-61 238.8 198 61.6
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.7e-61 238.8 263 52.5
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 5.8e-59 231.9 155 72.9
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.9e-58 229.6 155 72.3
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 4.9e-58 228.8 155 72.3
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.3e-55 220.7 183 60.7
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 5.4e-49 198.7 233 40.8
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 2.3e-47 193.4 205 45.4
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 3.6e-45 186.0 152 55.3
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 3.1e-44 183.0 153 60.8
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.1e-41 174.5 120 70.0
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 5.4e-41 172.2 220 42.3
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 3.1e-28 129.8 149 53.0
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 2.6e-27 126.7 105 61.0
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 4.5e-27 125.9 159 49.7
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 1.3e-26 124.4 105 61.0
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 7.9e-24 115.2 104 59.6
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 8.7e-23 111.7 75 76.0
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 1.5e-22 110.9 123 56.1
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 2.3e-15 87.0 67 68.7
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 3.0e-15 86.7 211 28.4
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 9.0e-12 75.1 104 42.3
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 5.5e-09 65.9 157 30.6
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 9.3e-09 65.1 197 30.5
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 1.6e-08 64.3 158 32.3
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 3.6e-08 63.2 196 31.1
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 4.6e-08 62.8 195 29.7
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 6.1e-08 62.4 198 30.8
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 6.1e-08 62.4 198 30.3
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 6.1e-08 62.4 165 29.1
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.0e-07 61.6 195 27.2
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.3e-07 61.2 143 28.0
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.3e-07 61.2 198 30.8
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.3e-07 61.2 175 25.7
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 1.3e-07 61.2 157 32.5
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.8e-07 60.8 195 28.2
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.8e-07 60.8 142 29.6
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.8e-07 60.8 215 26.5
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.8e-07 60.8 151 32.5
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.8e-07 60.8 157 32.5
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.3e-07 60.5 143 28.7
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 2.3e-07 60.5 151 31.1
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 2.3e-07 60.5 216 28.2
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 3.9e-07 59.7 206 27.2
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 5.1e-07 59.3 151 31.8
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 5.1e-07 59.3 195 28.2
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 5.1e-07 59.3 154 32.5
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 5.1e-07 59.3 151 31.8
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 8.7e-07 58.5 154 33.1
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 2.5e-06 57.0 194 28.9
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 3.3e-06 56.6 148 29.7
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.3e-06 56.6 154 31.2
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 4.3e-06 56.2 195 28.2
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 5.7e-06 55.8 195 27.2
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 7.4e-06 55.5 198 24.7
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 9.7e-06 55.1 154 30.5


User provided reference genes

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