Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 3.8e-271 937.6 474 100.0
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.7e-247 859.0 470 93.4
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.3e-205 719.9 468 78.0
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 5.5e-185 651.4 488 68.4
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 4.5e-171 605.1 476 63.4
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 7.4e-166 587.8 464 66.8
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.2e-165 586.3 464 66.6
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 4.8e-165 585.1 465 65.4
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.2e-165 584.3 486 64.6
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 3.1e-164 582.4 457 64.1
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 2.6e-163 579.3 461 63.6
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 7.7e-163 577.8 465 63.0
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.2e-162 576.2 467 63.0
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 1.1e-161 573.9 464 62.7
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 2.5e-161 572.8 463 63.9
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 9.4e-161 570.9 456 63.2
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.2e-160 570.5 464 63.1
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 2.3e-159 566.2 459 62.7
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 5.2e-159 565.1 463 63.9
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.5e-158 563.5 464 64.0
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 4.4e-158 562.0 466 62.2
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 9.7e-158 560.8 464 61.4
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.8e-157 558.5 462 62.6
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 6.3e-157 558.1 481 61.5
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 8.2e-157 557.8 464 61.0
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 8.2e-157 557.8 428 67.1
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 1.8e-156 556.6 449 63.3
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 2.4e-156 556.2 463 60.5
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.2e-155 553.9 449 63.5
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 2.0e-155 553.1 464 60.8
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 2.5e-153 546.2 463 58.7
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 2.5e-153 546.2 459 61.0
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 1.6e-152 543.5 471 60.1
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 1.6e-152 543.5 466 60.1
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.7e-152 542.7 461 61.4
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.7e-152 542.7 463 61.3
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 4.7e-152 542.0 463 59.2
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 4.7e-152 542.0 430 64.2
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 6.1e-152 541.6 473 56.9
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 1.4e-151 540.4 460 58.9
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 5.2e-151 538.5 471 59.7
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 8.8e-151 537.7 452 59.5
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 1.5e-150 537.0 452 59.5
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 2.0e-150 536.6 450 60.4
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.6e-150 536.2 456 59.4
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 4.4e-150 535.4 474 58.0
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.7e-149 533.5 466 59.0
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.2e-149 533.1 454 58.6
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 2.2e-149 533.1 480 58.3
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.4e-148 530.4 457 58.9
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.8e-148 530.0 464 59.3
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 5.4e-148 528.5 467 57.0
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.6e-147 526.9 462 58.0
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 4.5e-147 525.4 458 60.5
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 5.9e-147 525.0 449 59.7
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 7.7e-147 524.6 477 56.8
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.0e-146 524.2 483 55.1
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 1.3e-146 523.9 485 56.1
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 8.6e-146 521.2 453 58.3
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 8.6e-146 521.2 471 58.8
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.5e-145 520.4 453 58.3
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 5.5e-145 518.5 455 58.9
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 7.2e-145 518.1 458 59.0
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.1e-144 515.0 430 60.7
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 4.0e-143 512.3 454 58.6
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 8.8e-143 511.1 460 57.8
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 3.4e-142 509.2 466 57.3
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 8.3e-141 504.6 467 57.2
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 1.4e-140 503.8 420 60.5
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 2.4e-140 503.1 467 57.4
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 3.1e-140 502.7 475 56.4
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 1.2e-139 500.7 417 61.9
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.7e-139 499.6 472 58.1
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.6e-136 490.3 498 53.4
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 6.8e-135 485.0 486 53.5
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 2.9e-133 479.6 464 57.1
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.1e-132 477.6 476 53.4
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 3.0e-130 469.5 529 50.5
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 5.0e-130 468.8 456 51.3
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 8.6e-130 468.0 464 54.7
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.5e-126 457.2 483 48.9
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 1.9e-124 450.3 451 52.1
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.4e-124 448.7 462 54.5
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 7.8e-123 444.9 383 60.6
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.5e-118 430.6 458 47.6
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.4e-116 424.1 751 36.9
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.5e-110 404.1 334 61.1
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 4.4e-110 402.5 331 60.7
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 6.4e-109 398.7 317 61.2
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 4.1e-108 396.0 343 58.6
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.2e-107 394.4 387 56.6
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 3.6e-104 382.9 383 48.0
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 4.7e-104 382.5 337 59.3
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 1.1e-103 381.3 376 50.3
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 9.6e-97 358.2 333 55.0
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 1.3e-96 357.8 468 45.3
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.8e-96 356.7 417 44.8
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 3.1e-95 353.2 335 54.0
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 4.0e-95 352.8 336 54.8
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 9.3e-92 341.7 338 52.4
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.4e-87 327.0 391 48.3
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 3.8e-85 319.7 250 63.6
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.4e-76 291.2 366 45.1
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.0e-74 285.0 455 40.0
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 4.6e-67 259.6 241 58.5
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 6.9e-63 245.7 220 60.5
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 6.9e-63 245.7 212 62.7
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.7e-61 241.1 214 58.4
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 9.4e-60 235.3 192 58.9
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 5.0e-53 213.0 204 55.4
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 2.8e-48 197.2 130 70.8
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 2.4e-47 194.1 133 71.4
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 9.1e-47 192.2 190 52.1
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 1.6e-43 181.4 228 43.9
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 3.6e-35 153.7 148 58.1
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 3.7e-32 143.7 94 68.1
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 1.4e-31 141.7 134 59.7
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 2.1e-27 127.9 130 56.9
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 5.0e-21 106.7 104 48.1
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 4.3e-20 103.6 448 25.0
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 1.8e-18 98.2 411 23.8
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 2.3e-18 97.8 75 66.7
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 2.6e-17 94.4 137 41.6
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 3.4e-17 94.0 400 23.0
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 3.7e-16 90.5 390 26.2
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.1e-15 89.0 58 72.4
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.4e-07 62.0 37 81.1


User provided reference genes

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