Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 0.0e+00 1254.6 709 100.0
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 0.0e+00 1100.9 759 86.0
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 6.8e-147 525.4 828 44.7
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 2.6e-146 523.5 1019 43.2
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 3.9e-62 243.8 750 31.1
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 1.8e-46 191.8 794 27.0
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 6.3e-44 183.3 786 27.4
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 6.5e-41 173.3 891 26.3
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.1e-40 172.6 817 27.2
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.2e-39 169.1 829 25.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 6.3e-36 156.8 477 29.8
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.4e-35 155.6 819 26.5
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.1e-35 154.5 407 31.7
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.6e-34 152.1 454 31.3
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.3e-33 148.3 728 25.3
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 2.5e-32 144.8 454 31.9
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 5.6e-32 143.7 806 24.2
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 5.6e-32 143.7 213 39.4
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.8e-30 138.7 541 27.9
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 2.3e-30 138.3 496 27.4
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 1.2e-29 136.0 752 25.3
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.5e-29 135.6 759 24.1
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.7e-29 133.7 902 23.2
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.7e-28 132.1 774 24.5
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 2.2e-28 131.7 756 24.3
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.9e-28 131.3 824 22.7
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 8.3e-28 129.8 759 24.8
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 5.4e-27 127.1 541 27.5
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 1.2e-26 125.9 223 37.2
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 1.1e-24 119.4 682 24.3
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.5e-24 118.2 328 30.5
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.2e-23 115.9 328 30.2
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 6.2e-23 113.6 408 28.2
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 1.4e-22 112.5 499 26.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 5.2e-22 110.5 763 24.1
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 5.2e-22 110.5 760 24.9
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.2e-22 110.5 664 25.0
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 3.7e-20 104.4 415 26.3
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.4e-19 102.4 672 24.0
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 2.4e-19 101.7 780 22.9
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 6.0e-18 97.1 605 24.3
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 6.0e-18 97.1 289 29.1
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 1.3e-17 95.9 252 28.2
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 3.9e-17 94.4 219 34.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 3.9e-17 94.4 320 28.4
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 3.3e-16 91.3 353 27.2
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.6e-16 90.5 856 22.9
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 7.3e-16 90.1 616 23.9
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 8.1e-15 86.7 158 34.2
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 8.1e-15 86.7 647 24.0
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.1e-14 86.3 282 27.3
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.4e-14 85.9 132 37.9
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 1.8e-14 85.5 325 25.8
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 4.0e-14 84.3 146 37.7
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 5.2e-14 84.0 363 30.3
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 5.2e-14 84.0 143 35.0
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 6.8e-14 83.6 341 24.0
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 1.2e-13 82.8 245 31.0
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.5e-13 82.4 870 21.4
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 2.6e-13 81.6 567 22.9
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 3.4e-13 81.3 289 28.0
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 3.4e-13 81.3 111 39.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 4.4e-13 80.9 269 26.8
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 4.4e-13 80.9 373 22.3
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 5.8e-13 80.5 154 33.8
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 7.5e-13 80.1 756 22.2
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 7.5e-13 80.1 155 36.8
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 7.5e-13 80.1 199 31.2
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 9.8e-13 79.7 209 30.1
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.3e-12 79.3 169 34.3
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.3e-12 79.3 726 23.1
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.7e-12 79.0 623 24.1
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 2.2e-12 78.6 269 26.4
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.9e-12 78.2 606 24.3
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 2.9e-12 78.2 173 28.3
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 3.7e-12 77.8 170 30.0
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 4.9e-12 77.4 196 28.1
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 6.4e-12 77.0 399 26.8
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.4e-11 75.9 580 22.8
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 1.9e-11 75.5 268 27.6
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.9e-11 75.5 176 30.7
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 2.4e-11 75.1 639 23.8
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 3.2e-11 74.7 113 38.9
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.1e-11 74.3 245 27.8
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.1e-11 74.3 216 29.2
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 4.1e-11 74.3 102 44.1
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 5.4e-11 73.9 272 29.0
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 7.1e-11 73.6 785 22.7
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 9.2e-11 73.2 610 22.0
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 1.2e-10 72.8 360 24.7
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.2e-10 72.8 252 27.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 1.2e-10 72.8 202 29.2
Zm00001eb048990 Zea mays HOM05D003520 ORTHO05D003332 1.2e-10 72.8 335 22.7
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.6e-10 72.4 713 22.0
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 2.7e-10 71.6 149 30.9
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 4.6e-10 70.9 327 25.7
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 4.6e-10 70.9 138 31.9
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 6.0e-10 70.5 281 28.1
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 6.0e-10 70.5 397 24.7
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 7.8e-10 70.1 202 30.2
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.0e-09 69.7 258 26.7
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.3e-09 69.3 606 23.8
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.3e-09 69.3 140 40.7
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 1.3e-09 69.3 273 28.6
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 1.3e-09 69.3 125 32.8
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.7e-09 68.9 272 29.0
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 1.7e-09 68.9 518 24.1
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.7e-09 68.9 92 44.6
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 3.0e-09 68.2 295 27.1
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 3.9e-09 67.8 283 29.0
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 5.1e-09 67.4 64 59.4
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 8.6e-09 66.6 412 25.2
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 8.6e-09 66.6 552 24.5
Os04g0193200 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 8.6e-09 66.6 215 26.5
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 1.1e-08 66.2 272 24.6
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 1.5e-08 65.9 324 27.8
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 1.9e-08 65.5 279 26.2
Zm00001eb376080 Zea mays HOM05D003520 ORTHO05D003332 1.9e-08 65.5 140 27.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 3.3e-08 64.7 141 37.6
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 3.3e-08 64.7 427 27.4
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 3.3e-08 64.7 624 24.0
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 3.3e-08 64.7 624 24.0
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 4.3e-08 64.3 92 38.0
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 5.6e-08 63.9 615 22.3
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 5.6e-08 63.9 236 28.8
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 7.3e-08 63.5 53 52.8
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 1.2e-07 62.8 245 27.3
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.2e-07 62.8 443 24.6
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.6e-07 62.4 188 26.6
BraA10t43073Z Brassica rapa HOM05D012366 ORTHO05D003332 2.1e-07 62.0 113 33.6
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.8e-07 61.6 181 28.2
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 2.8e-07 61.6 649 21.9
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 4.7e-07 60.8 696 24.0
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 4.7e-07 60.8 47 55.3
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 8.1e-07 60.1 273 26.7
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 8.1e-07 60.1 631 20.1
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.4e-06 59.3 328 26.2
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 1.4e-06 59.3 87 35.6
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.8e-06 58.9 103 35.0
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.1e-06 58.2 422 21.3
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 3.1e-06 58.2 127 35.4
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 4.0e-06 57.8 326 23.0
SEGI_27755 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 4.0e-06 57.8 78 42.3
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 5.2e-06 57.4 611 23.1
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 6.8e-06 57.0 549 23.3
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 6.8e-06 57.0 240 26.2
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 6.8e-06 57.0 528 23.3
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 8.9e-06 56.6 274 27.7
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 8.9e-06 56.6 84 35.7


User provided reference genes

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