Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 0.0e+00 1135.9 609 100.0
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 0.0e+00 1082.8 633 92.6
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.1e-253 879.0 610 79.2
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.8e-236 822.8 618 70.4
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.0e-207 727.2 659 63.0
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.3e-202 710.3 643 61.6
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 2.8e-202 709.1 614 64.7
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 3.7e-202 708.8 651 62.4
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 4.1e-201 705.3 647 61.8
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 4.1e-201 705.3 663 60.9
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.0e-201 704.5 646 62.4
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 9.2e-201 704.1 643 62.7
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.6e-200 703.4 601 64.1
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.8e-199 698.7 651 61.9
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 6.6e-199 698.0 677 58.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.3e-198 695.3 677 58.6
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 7.3e-198 694.5 677 59.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.0e-196 690.6 658 59.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.3e-196 689.5 652 60.7
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.2e-195 687.2 652 59.8
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.5e-195 686.8 658 59.3
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 2.0e-195 686.4 647 61.8
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 9.8e-195 684.1 657 60.3
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.7e-194 683.3 632 60.6
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 2.9e-194 682.6 643 60.7
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 7.0e-193 677.9 652 59.7
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.3e-191 673.7 663 58.4
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.6e-191 671.4 662 58.9
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 6.6e-191 671.4 642 60.3
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.6e-191 671.0 662 58.9
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 8.6e-191 671.0 667 57.9
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 8.6e-191 671.0 659 57.8
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.1e-190 670.6 653 58.5
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.9e-190 669.8 650 59.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 5.6e-190 668.3 652 58.7
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.1e-189 666.4 664 58.7
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.1e-189 666.4 642 60.6
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.8e-189 666.0 631 60.4
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 3.6e-189 665.6 650 59.1
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.4e-188 663.7 643 59.6
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 5.2e-188 661.8 643 58.3
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.2e-187 660.6 654 58.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 2.6e-187 659.4 651 57.9
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.4e-187 659.1 584 62.5
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 4.4e-187 658.7 648 59.3
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 5.8e-187 658.3 558 62.2
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.2e-186 656.4 636 59.1
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 2.9e-186 656.0 641 57.4
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.9e-186 656.0 648 59.3
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.9e-186 656.0 646 57.9
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.9e-186 655.2 569 61.5
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.6e-184 650.2 690 55.9
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 2.0e-184 649.8 623 60.0
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 6.0e-184 648.3 652 58.6
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.0e-183 647.5 656 57.3
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.3e-183 647.1 626 59.1
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 8.6e-183 644.4 588 61.1
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.5e-182 643.7 640 57.5
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 3.3e-182 642.5 622 58.2
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 4.3e-182 642.1 634 57.4
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 2.1e-181 639.8 622 58.0
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.8e-181 639.4 650 58.2
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 4.7e-181 638.6 619 58.5
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 8.1e-181 637.9 650 58.0
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 3.1e-180 636.0 650 55.8
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 5.8e-179 631.7 644 57.1
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 7.5e-179 631.3 680 55.1
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 7.5e-179 631.3 638 56.9
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 3.7e-178 629.0 639 56.8
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 3.7e-178 629.0 642 57.0
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 6.4e-178 628.2 669 55.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 6.4e-178 628.2 642 55.8
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 3.2e-177 625.9 645 56.0
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 5.4e-177 625.2 647 56.0
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 5.4e-177 625.2 635 56.2
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 7.1e-177 624.8 637 55.9
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 9.2e-177 624.4 654 55.8
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.6e-176 623.6 624 56.6
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 3.5e-176 622.5 606 58.3
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.0e-175 620.9 630 56.3
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-175 620.5 647 55.6
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.3e-175 620.5 613 59.1
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.7e-175 620.2 642 55.6
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.5e-174 617.1 636 56.1
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.6e-173 613.6 621 56.8
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.6e-173 613.6 582 61.3
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 8.1e-173 611.3 644 55.9
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 4.1e-169 599.0 638 54.5
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 6.6e-167 591.7 626 56.4
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.4e-164 583.2 535 58.1
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 2.4e-164 583.2 638 55.0
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.8e-162 575.9 609 56.7
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 5.6e-158 562.0 584 57.5
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 9.6e-158 561.2 516 58.5
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.1e-156 557.8 627 52.0
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 2.0e-155 553.5 651 52.2
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.3e-151 540.0 643 51.3
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.4e-147 526.2 661 50.4
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.1e-145 521.2 653 47.2
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.0e-135 488.0 404 67.8
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 8.7e-135 485.0 667 47.7
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.4e-129 467.6 428 66.6
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 2.1e-128 463.8 567 47.8
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 6.7e-127 458.8 623 44.5
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 5.5e-121 439.1 342 68.4
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.6e-115 420.2 655 44.1
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.5e-113 413.7 675 40.4
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 3.9e-111 406.4 629 42.3
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 3.8e-106 389.8 559 44.2
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.7e-98 364.4 387 55.8
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 3.2e-89 333.6 528 41.7
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.5e-86 324.7 642 34.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.0e-84 315.8 249 66.7
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.4e-76 290.8 279 56.6
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.1e-76 290.0 313 51.8
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 8.0e-72 275.8 273 56.4
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 6.8e-71 272.7 312 49.0
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 6.6e-58 229.6 711 28.6
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.9e-57 228.0 652 29.4
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.1e-48 198.0 148 65.5
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.7e-43 181.0 196 55.1
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 9.3e-36 156.0 335 31.3
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.2e-35 155.6 177 52.5
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 2.3e-34 151.4 226 42.5
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 3.9e-34 150.6 226 42.0
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.1e-31 141.0 157 52.9
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.2e-30 139.0 144 51.4
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.6e-30 137.9 95 68.4
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 2.2e-29 134.8 144 51.4
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 3.8e-29 134.0 112 58.9
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.1e-28 132.5 99 67.7
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.9e-28 131.7 144 50.7
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.6e-27 128.6 129 51.2
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.3e-25 120.9 575 27.8
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.3e-24 119.0 151 49.0
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 2.5e-20 104.8 269 29.0
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 1.5e-14 85.5 77 61.0
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 2.2e-13 81.6 55 70.9
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 5.0e-13 80.5 142 35.9
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.1e-12 79.3 142 35.2
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.1e-12 79.3 142 35.2
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 1.4e-12 79.0 142 35.2
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 1.4e-12 79.0 142 35.2
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 4.2e-12 77.4 97 50.5
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 4.2e-12 77.4 142 34.5
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 9.3e-12 76.3 120 39.2
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.8e-08 64.7 44 65.9
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 6.9e-07 60.1 45 55.6


User provided reference genes

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