Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 6.3e-160 567.4 285 100.0
AUR62021206 Chenopodium quinoa HOM05D025484 ORTHO05D017259 1.2e-118 430.3 256 87.9
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 1.0e-69 267.7 279 56.6
Hund04730 Selenicereus undatus HOM05D025484 ORTHO05D003332 5.1e-61 238.8 326 46.0
Sc13g0008550 Simmondsia chinensis HOM05D025484 ORTHO05D003332 3.2e-23 113.2 442 28.3
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 3.5e-17 93.2 367 28.9
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 5.0e-16 89.4 95 44.2
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.2e-14 84.7 298 27.5
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.8e-13 80.9 57 57.9
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.5e-12 77.8 346 26.9
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 2.0e-12 77.4 85 50.6
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 3.4e-12 76.6 303 26.7
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 9.7e-12 75.1 305 28.9
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.3e-11 74.7 64 53.1
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.3e-11 74.7 320 25.9
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 2.2e-11 73.9 127 41.7
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 4.8e-11 72.8 314 26.1
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.8e-10 70.9 372 25.8
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.8e-10 70.9 287 27.5
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.4e-10 70.5 342 26.0
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 4.1e-10 69.7 64 54.7
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 4.1e-10 69.7 64 54.7
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.0e-10 68.9 66 51.5
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 7.0e-10 68.9 64 54.7
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 7.0e-10 68.9 64 54.7
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 7.0e-10 68.9 64 54.7
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 7.0e-10 68.9 99 33.3
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 7.0e-10 68.9 287 24.4
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 7.0e-10 68.9 187 27.8
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 7.0e-10 68.9 149 33.6
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 9.1e-10 68.6 82 45.1
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 9.1e-10 68.6 111 37.8
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 9.1e-10 68.6 74 47.3
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.6e-09 67.8 202 33.7
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 2.7e-09 67.0 195 27.2
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 3.5e-09 66.6 295 27.5
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 3.5e-09 66.6 100 39.0
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 3.5e-09 66.6 64 50.0
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 4.5e-09 66.2 199 31.7
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 4.5e-09 66.2 101 41.6
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 4.5e-09 66.2 338 24.6
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 4.5e-09 66.2 96 41.7
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 5.9e-09 65.9 137 33.6
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 5.9e-09 65.9 68 50.0
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 7.7e-09 65.5 107 39.3
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 7.7e-09 65.5 45 51.1
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.0e-08 65.1 90 42.2
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.3e-08 64.7 70 42.9
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.7e-08 64.3 88 42.0
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.7e-08 64.3 80 41.2
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 2.2e-08 63.9 98 37.8
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.2e-08 63.9 93 34.4
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 2.2e-08 63.9 128 36.7
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 2.9e-08 63.5 314 27.1
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 2.9e-08 63.5 66 45.5
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.8e-08 63.2 204 25.0
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 5.0e-08 62.8 60 45.0
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 5.0e-08 62.8 367 26.4
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.0e-08 62.8 279 26.5
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 5.0e-08 62.8 157 31.8
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 5.0e-08 62.8 367 23.7
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 5.0e-08 62.8 70 47.1
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 6.5e-08 62.4 93 34.4
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 8.5e-08 62.0 59 50.8
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 8.5e-08 62.0 64 45.3
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.1e-07 61.6 133 32.3
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.5e-07 61.2 87 40.2
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 1.5e-07 61.2 325 24.6
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 1.5e-07 61.2 189 31.2
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.9e-07 60.8 80 43.8
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.9e-07 60.8 123 35.8
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.9e-07 60.8 279 28.3
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 1.9e-07 60.8 136 35.3
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.9e-07 60.8 56 48.2
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 1.9e-07 60.8 285 27.0
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.5e-07 60.5 57 43.9
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 3.2e-07 60.1 158 29.1
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 3.2e-07 60.1 74 40.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.2e-07 60.1 259 27.0
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 3.2e-07 60.1 85 41.2
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 3.2e-07 60.1 63 52.4
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 3.2e-07 60.1 125 32.8
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 4.2e-07 59.7 48 58.3
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 4.2e-07 59.7 51 41.2
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 4.2e-07 59.7 48 45.8
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 4.2e-07 59.7 64 48.4
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.2e-07 59.7 106 37.7
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 5.5e-07 59.3 182 32.4
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 5.5e-07 59.3 52 46.2
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 5.5e-07 59.3 98 41.8
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 5.5e-07 59.3 64 46.9
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 5.5e-07 59.3 101 37.6
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 5.5e-07 59.3 321 24.6
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 5.5e-07 59.3 97 36.1
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 5.5e-07 59.3 91 38.5
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 7.2e-07 58.9 185 33.5
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 7.2e-07 58.9 61 41.0
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.2e-07 58.9 66 42.4
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 7.2e-07 58.9 113 35.4
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 7.2e-07 58.9 62 50.0
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 7.2e-07 58.9 45 53.3
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 7.2e-07 58.9 66 43.9
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 7.2e-07 58.9 65 41.5
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 7.2e-07 58.9 104 33.7
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 7.2e-07 58.9 111 35.1
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 7.2e-07 58.9 85 40.0
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 9.4e-07 58.5 305 19.3
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 9.4e-07 58.5 66 42.4
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 9.4e-07 58.5 66 42.4
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 9.4e-07 58.5 66 42.4
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 9.4e-07 58.5 66 42.4
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 9.4e-07 58.5 135 33.3
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 9.4e-07 58.5 101 35.6
SEGI_01639 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 9.4e-07 58.5 53 49.1
SEGI_04034 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 9.4e-07 58.5 53 49.1
SEGI_13254 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 9.4e-07 58.5 53 49.1
SEGI_35066 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 9.4e-07 58.5 53 49.1
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 1.2e-06 58.2 128 30.5
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 1.6e-06 57.8 252 25.8
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.6e-06 57.8 124 31.5
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 1.6e-06 57.8 233 26.6
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.6e-06 57.8 82 40.2
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.6e-06 57.8 183 29.0
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.6e-06 57.8 183 29.0
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.6e-06 57.8 87 35.6
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.6e-06 57.8 67 46.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.1e-06 57.4 55 49.1
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.1e-06 57.4 70 44.3
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.7e-06 57.0 160 30.6
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.7e-06 57.0 63 44.4
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.7e-06 57.0 66 45.5
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 3.6e-06 56.6 81 37.0
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 3.6e-06 56.6 233 29.2
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 3.6e-06 56.6 83 37.3
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.6e-06 56.6 52 51.9
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.6e-06 56.6 236 24.2
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 4.7e-06 56.2 66 47.0
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 4.7e-06 56.2 66 47.0
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 4.7e-06 56.2 64 46.9
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 4.7e-06 56.2 108 34.3
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 4.7e-06 56.2 174 26.4
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 6.1e-06 55.8 84 38.1
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 6.1e-06 55.8 201 30.3
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 8.0e-06 55.5 66 42.4
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 8.0e-06 55.5 288 22.9


User provided reference genes

Program Settings