Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.6e-184 649.4 360 100.0
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.4e-179 631.7 360 96.9
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 1.2e-131 473.8 360 73.6
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 2.1e-128 463.0 358 72.6
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.4e-127 460.3 337 76.0
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 5.2e-127 458.4 354 69.8
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 2.0e-126 456.4 361 70.1
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 2.0e-126 456.4 367 70.6
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 2.6e-126 456.1 324 78.4
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 2.6e-126 456.1 335 75.5
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 3.4e-126 455.7 318 75.8
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 4.4e-126 455.3 350 72.6
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 7.5e-126 454.5 354 70.6
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.7e-125 453.4 353 72.5
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 3.7e-125 452.2 343 70.3
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 6.3e-125 451.4 354 71.2
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 8.3e-125 451.1 354 70.1
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 1.1e-124 450.7 356 73.0
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.1e-124 450.7 362 70.7
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 1.4e-124 450.3 344 70.3
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 5.4e-124 448.4 354 71.2
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 7.0e-124 448.0 318 74.5
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 9.1e-124 447.6 354 69.8
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.2e-123 447.2 263 89.7
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 3.5e-123 445.7 357 69.5
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 7.7e-123 444.5 328 74.7
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 1.0e-122 444.1 328 73.8
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 1.3e-122 443.7 354 69.2
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.3e-122 443.7 356 69.7
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 1.7e-122 443.4 345 71.0
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 2.2e-122 443.0 307 77.2
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.2e-122 443.0 348 71.8
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 2.2e-122 443.0 354 70.1
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 2.9e-122 442.6 354 71.2
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.9e-122 442.6 351 71.2
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.9e-122 442.6 348 71.8
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 2.9e-122 442.6 277 83.8
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 3.8e-122 442.2 339 70.5
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.1e-121 440.7 354 69.2
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.1e-121 440.7 264 88.3
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.2e-121 439.1 265 87.9
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.2e-120 437.2 265 87.5
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.6e-120 436.8 278 83.1
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 3.6e-120 435.6 265 87.2
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.7e-120 435.3 264 87.5
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 4.7e-120 435.3 273 83.9
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 6.1e-120 434.9 278 83.5
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 6.1e-120 434.9 278 83.5
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 6.1e-120 434.9 350 70.9
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 8.0e-120 434.5 311 75.2
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.8e-119 433.3 345 71.9
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.8e-119 433.3 264 84.8
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 3.0e-119 432.6 278 82.0
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 5.2e-119 431.8 364 66.8
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 5.2e-119 431.8 278 82.4
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 5.2e-119 431.8 262 84.0
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 8.8e-119 431.0 278 81.3
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 8.8e-119 431.0 278 81.3
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 8.8e-119 431.0 278 82.4
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.5e-118 430.3 309 75.7
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 3.4e-118 429.1 278 80.9
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 3.4e-118 429.1 278 82.4
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 4.4e-118 428.7 343 67.9
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 4.4e-118 428.7 278 82.4
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 5.7e-118 428.3 283 80.9
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 9.8e-118 427.6 278 80.6
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 1.3e-117 427.2 268 83.6
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 1.7e-117 426.8 262 84.7
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.8e-117 426.0 384 65.1
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 3.7e-117 425.6 273 82.1
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 3.7e-117 425.6 273 82.1
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 4.9e-117 425.2 268 83.2
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 4.9e-117 425.2 278 79.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 8.3e-117 424.5 273 81.3
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 8.3e-117 424.5 366 67.8
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.8e-116 423.3 276 80.4
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.8e-116 423.3 273 81.3
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 2.4e-116 422.9 273 82.1
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 3.1e-116 422.5 261 84.3
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 5.4e-116 421.8 273 82.4
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.2e-115 420.6 349 67.6
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 1.0e-114 417.5 266 82.0
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.7e-114 416.8 284 79.2
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 6.8e-111 404.8 289 74.4
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 1.2e-110 404.1 300 73.7
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.5e-110 403.7 275 79.3
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.8e-108 396.7 314 69.7
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 1.9e-105 386.7 315 69.2
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 5.6e-105 385.2 253 82.6
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 8.0e-104 381.3 312 68.6
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.2e-103 378.6 351 64.7
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 7.5e-102 374.8 273 72.9
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 6.4e-101 371.7 237 84.0
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 6.4e-101 371.7 238 82.4
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.4e-100 370.5 258 76.7
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 3.5e-99 365.9 266 74.1
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.0e-98 364.4 313 65.2
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.0e-98 364.4 309 67.3
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 3.9e-98 362.5 298 70.5
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 1.1e-97 360.9 298 70.1
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 5.2e-95 352.1 225 81.3
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 1.2e-94 350.9 258 72.1
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 5.4e-92 342.0 361 56.5
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.1e-87 326.2 196 86.7
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 2.6e-86 323.2 243 73.3
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 8.4e-85 318.2 195 84.6
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 1.4e-84 317.4 252 69.4
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.6e-80 303.9 262 63.7
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 5.1e-74 282.3 246 65.0
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 1.5e-70 270.8 245 61.6
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.6e-70 270.0 254 63.4
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 2.2e-69 266.9 245 59.6
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.8e-63 247.3 282 51.8
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 4.9e-61 239.2 231 62.3
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.3e-58 231.1 262 55.3
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 1.6e-56 224.2 231 60.6
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 4.9e-53 212.6 155 74.2
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.4e-47 193.7 140 77.1
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 7.6e-46 188.7 135 74.1
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.1e-39 166.4 98 86.7
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 9.4e-36 155.2 142 63.4
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 2.7e-35 153.7 206 52.9
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 2.0e-33 147.5 92 82.6
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 3.3e-33 146.7 159 57.2
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 9.7e-33 145.2 159 56.6
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.0e-29 135.2 108 69.4
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 4.7e-19 99.8 80 65.0
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.7e-16 91.3 96 58.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 1.8e-15 87.8 60 78.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.9e-12 77.8 232 31.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 1.0e-10 72.0 47 80.9
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 5.9e-06 56.2 44 68.2
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.9e-06 56.2 29 100.0


User provided reference genes

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