Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.2e-82 308.9 153 100.0
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 6.7e-76 287.3 149 94.0
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.8e-74 282.0 152 87.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 8.2e-74 280.4 150 89.3
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 8.2e-74 280.4 149 91.3
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.2e-74 280.4 149 91.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.2e-74 280.4 149 91.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.2e-74 280.4 149 91.3
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 8.2e-74 280.4 149 91.3
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.4e-73 279.6 149 91.9
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-73 279.3 149 89.9
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.4e-73 278.9 149 89.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.1e-73 278.5 149 89.3
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.1e-73 278.5 149 89.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.1e-73 278.5 149 89.3
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 3.1e-73 278.5 149 88.6
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.1e-73 278.1 149 89.9
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 9.1e-73 276.9 149 89.3
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 9.1e-73 276.9 149 88.6
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.2e-72 276.6 149 88.6
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.2e-72 276.6 150 87.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.5e-72 276.2 148 89.2
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.0e-72 275.8 149 87.2
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.0e-72 275.8 150 87.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 2.0e-72 275.8 149 87.2
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.6e-72 275.4 149 87.9
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.6e-72 275.4 149 88.6
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.6e-72 275.4 149 89.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.4e-72 275.0 149 87.9
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.4e-72 275.0 149 87.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 5.9e-72 274.2 148 88.5
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.3e-71 273.1 149 86.6
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.3e-71 273.1 149 88.6
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.7e-71 272.7 148 87.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.9e-71 271.9 149 87.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.9e-71 271.9 149 86.6
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.9e-71 271.9 149 86.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 6.5e-71 270.8 149 87.2
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 6.5e-71 270.8 149 87.2
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 8.5e-71 270.4 149 86.6
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.1e-70 270.0 149 86.6
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.1e-70 270.0 149 85.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.4e-70 269.6 147 88.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.4e-70 269.6 148 87.2
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-70 269.6 149 86.6
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-70 269.6 149 86.6
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.4e-70 269.6 149 86.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.9e-70 269.2 149 87.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.5e-70 268.9 149 87.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.2e-70 268.5 143 89.5
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.2e-70 268.5 149 85.2
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.2e-70 268.1 166 81.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.2e-70 268.1 149 85.9
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.2e-70 268.1 149 86.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 5.5e-70 267.7 149 85.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.5e-70 267.7 166 81.3
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.5e-70 267.7 166 81.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 5.5e-70 267.7 149 85.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 7.2e-70 267.3 149 85.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.6e-69 266.2 148 86.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 3.6e-69 265.0 149 83.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.6e-69 265.0 149 86.6
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.7e-69 264.6 149 85.2
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.1e-69 264.2 149 83.9
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 6.1e-69 264.2 149 85.2
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 6.1e-69 264.2 149 83.9
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 6.1e-69 264.2 149 85.2
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 7.9e-69 263.8 148 85.1
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.0e-68 263.5 149 83.2
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.0e-68 263.5 149 84.6
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.0e-68 263.5 148 85.1
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.8e-68 262.7 149 83.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.8e-68 262.7 145 86.2
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 3.0e-68 261.9 149 83.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 5.1e-68 261.2 149 82.6
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 3.3e-67 258.5 149 81.2
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.3e-67 258.5 166 77.1
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.4e-67 258.1 149 80.5
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.4e-67 257.3 149 80.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 7.4e-67 257.3 162 77.8
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.3e-66 256.5 149 84.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.2e-66 255.8 149 80.5
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.2e-66 255.8 149 81.2
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.7e-66 255.0 149 79.9
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 6.3e-66 254.2 148 79.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.3e-66 254.2 149 80.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 6.3e-66 254.2 149 82.6
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.2e-66 253.8 149 79.9
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.8e-65 252.7 172 73.8
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.4e-65 252.3 147 83.7
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.1e-65 251.9 149 79.2
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.1e-65 251.5 149 78.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 5.3e-65 251.1 149 78.5
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 5.3e-65 251.1 149 77.9
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 9.1e-65 250.4 149 79.2
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-64 249.6 149 78.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.6e-64 249.6 149 80.5
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.0e-64 249.2 177 70.6
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.6e-64 248.8 149 77.2
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.6e-64 248.8 149 77.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 3.8e-63 245.0 150 76.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.5e-62 243.0 135 87.4
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.5e-62 242.3 149 77.2
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 5.5e-62 241.1 149 76.5
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.6e-61 239.6 194 64.9
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.1e-61 239.2 149 79.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.7e-61 238.8 150 78.7
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.7e-61 238.0 138 82.6
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 6.1e-61 237.7 148 77.7
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 8.0e-61 237.3 203 61.1
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.0e-60 236.9 138 82.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.8e-60 236.1 150 76.7
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 5.2e-60 234.6 160 76.9
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.1e-59 233.4 126 85.7
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.0e-59 232.6 150 72.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.6e-59 232.3 149 71.1
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.3e-58 229.9 133 83.5
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.2e-58 229.2 149 73.8
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.1e-57 226.9 124 83.9
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.1e-57 224.9 123 86.2
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 7.0e-57 224.2 150 74.0
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-54 215.3 139 79.9
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.6e-51 205.7 150 71.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.4e-51 204.9 179 57.5
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.3e-50 203.4 134 73.1
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 2.8e-50 202.2 152 68.4
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.7e-50 201.8 149 70.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 8.3e-50 200.7 138 69.6
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 9.1e-49 197.2 141 71.6
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.7e-48 195.7 107 88.8
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-47 193.4 149 69.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.7e-47 193.0 150 65.3
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.7e-47 193.0 115 82.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.5e-47 191.0 114 78.9
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-46 190.3 104 89.4
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-46 190.3 104 89.4
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-46 190.3 104 89.4
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-46 189.9 106 87.7
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.5e-46 189.1 104 88.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.6e-45 186.4 107 87.9
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 6.1e-45 184.5 104 86.5
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.4e-43 178.7 117 70.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 4.9e-42 174.9 104 83.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 4.5e-40 168.3 90 84.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 5.9e-40 167.9 90 90.0
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.1e-33 147.1 84 85.7
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.0e-31 139.0 77 92.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 3.3e-30 135.6 103 62.1
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.8e-29 132.5 76 86.8
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.3e-26 123.6 103 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.7e-26 123.2 81 71.6
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-26 123.2 87 67.8
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.7e-24 115.9 81 71.6
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.3e-22 107.8 75 70.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-21 106.3 74 67.6
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.8e-21 105.9 75 64.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.0e-19 99.8 145 42.1
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-18 96.7 63 73.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-18 96.7 67 73.1
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 6.0e-16 88.2 50 88.0
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 6.0e-16 88.2 50 88.0
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 7.8e-16 87.8 122 39.3
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 5.6e-14 81.6 109 50.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 1.8e-12 76.6 158 34.2
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.0e-12 75.5 44 77.3
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.4e-10 67.8 37 83.8


User provided reference genes

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