Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.0e-127 459.1 233 100.0
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 9.8e-111 403.7 239 88.7
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.5e-74 283.5 195 75.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.6e-74 281.6 194 75.3
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 2.1e-65 253.1 166 75.9
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.8e-65 252.7 199 66.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 3.6e-65 252.3 199 66.8
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 3.9e-59 232.3 168 66.7
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.1e-58 230.7 169 67.5
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.1e-58 230.7 169 67.5
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.3e-58 229.2 169 66.9
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.3e-58 229.2 169 66.9
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.6e-58 228.4 169 66.9
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 2.4e-56 223.0 169 61.5
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 5.3e-56 221.9 168 62.5
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.0e-55 219.9 170 65.9
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 4.5e-55 218.8 152 68.4
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.3e-54 217.2 184 60.3
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.4e-53 213.8 155 67.7
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.2e-53 212.2 155 63.9
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 9.3e-53 211.1 172 61.0
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 9.3e-53 211.1 249 51.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 2.7e-52 209.5 157 62.4
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 3.5e-52 209.1 155 62.6
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 7.9e-52 208.0 158 62.0
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.3e-51 206.5 145 69.7
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 5.1e-51 205.3 156 66.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.9e-50 203.4 157 63.7
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 4.3e-50 202.2 152 65.1
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 7.4e-50 201.4 172 58.7
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 7.4e-50 201.4 155 61.3
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.8e-49 199.5 157 61.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.8e-49 199.5 157 61.8
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 3.7e-49 199.1 164 57.3
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 4.8e-49 198.7 153 63.4
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 8.2e-49 198.0 157 61.1
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.1e-48 197.6 138 67.4
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.1e-48 197.6 159 61.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 1.4e-48 197.2 138 66.7
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.4e-48 197.2 169 58.0
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 2.4e-48 196.4 162 59.3
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 5.3e-48 195.3 146 65.1
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 9.0e-48 194.5 159 62.3
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.0e-48 194.5 154 60.4
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 9.0e-48 194.5 168 57.7
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.2e-47 194.1 164 56.1
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 3.4e-47 192.6 259 49.4
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 4.5e-47 192.2 155 61.3
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 5.8e-47 191.8 155 61.9
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.0e-46 191.0 169 57.4
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.0e-46 191.0 169 57.4
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.3e-46 190.7 176 56.2
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.9e-46 189.5 188 53.2
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 3.8e-46 189.1 154 63.0
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 3.8e-46 189.1 157 59.9
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 6.5e-46 188.3 184 53.8
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 8.4e-46 188.0 157 60.5
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 8.4e-46 188.0 155 61.3
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 8.4e-46 188.0 155 61.3
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 8.4e-46 188.0 157 58.6
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.1e-45 187.6 121 72.7
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.4e-45 187.2 175 56.0
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.9e-45 186.8 231 43.3
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 4.2e-45 185.7 175 56.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 4.2e-45 185.7 175 56.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 7.1e-45 184.9 169 57.4
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 9.3e-45 184.5 167 55.1
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 9.3e-45 184.5 154 61.0
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.2e-44 184.1 160 57.5
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.5e-44 182.6 155 56.1
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 3.5e-44 182.6 184 50.5
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 6.0e-44 181.8 155 56.1
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 7.9e-44 181.4 184 50.5
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 7.9e-44 181.4 152 60.5
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.0e-43 181.0 155 55.5
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.8e-43 180.3 232 42.2
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.3e-43 179.9 172 52.9
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.9e-43 179.1 159 54.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 3.9e-43 179.1 159 54.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.9e-43 179.1 159 54.1
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 3.9e-43 179.1 231 41.6
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 6.7e-43 178.3 160 57.5
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 6.7e-43 178.3 172 52.3
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 8.7e-43 177.9 159 53.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 4.3e-42 175.6 156 59.0
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 4.3e-42 175.6 152 55.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 3.7e-41 172.6 156 53.2
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 6.3e-41 171.8 169 51.5
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.1e-40 171.0 154 60.4
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.4e-40 170.6 123 66.7
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 3.4e-39 166.0 93 81.7
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.3e-38 164.1 221 40.3
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 5.0e-38 162.2 122 62.3
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.0e-38 162.2 157 53.5
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.1e-37 161.0 171 50.3
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.4e-37 160.6 166 51.2
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 3.6e-36 156.0 132 58.3
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 7.9e-36 154.8 162 53.1
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.0e-35 154.5 244 40.2
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.0e-35 152.9 131 53.4
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 5.1e-35 152.1 183 44.3
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.1e-34 151.0 122 58.2
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.1e-34 151.0 127 59.8
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 5.7e-34 148.7 145 54.5
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.8e-32 143.7 152 52.6
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 6.9e-32 141.7 110 64.5
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.7e-30 137.1 122 54.1
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 8.5e-30 134.8 102 58.8
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 8.5e-30 134.8 91 72.5
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.4e-29 134.0 95 69.5
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 2.5e-29 133.3 101 65.3
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 3.2e-29 132.9 104 58.7
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.8e-27 127.1 120 52.5
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 9.1e-24 114.8 109 58.7
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 2.6e-23 113.2 101 55.4
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 4.5e-23 112.5 80 58.8
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.7e-22 110.5 69 79.7
AUR62037821 Chenopodium quinoa HOM05D002681 ORTHO05D003372 3.9e-19 99.4 53 98.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 1.1e-16 91.3 69 60.9
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 3.2e-13 79.7 128 39.1
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 3.6e-12 76.3 123 37.4
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 9.7e-10 68.2 112 38.4
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 9.7e-10 68.2 105 44.8
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.7e-09 67.4 63 50.8
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.7e-09 67.4 63 50.8
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 2.2e-09 67.0 63 50.8
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.7e-09 66.2 54 61.1
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 8.2e-09 65.1 63 49.2
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.4e-08 64.3 121 38.8
Ah.02g128810 Amaranthus hybridus HOM05D002735 ORTHO05D003048 4.1e-08 62.8 58 63.8
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 4.1e-08 62.8 46 54.3
Ah.03g136610 Amaranthus hybridus HOM05D002735 ORTHO05D060665 5.9e-07 58.9 62 58.1
EL10Ac6g13408 Beta vulgaris HOM05D002681 ORTHO05D003372 5.9e-07 58.9 58 60.3
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 1.0e-06 58.2 121 33.9


User provided reference genes

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