Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 3417.9 1827 100.0
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 3093.9 1834 91.2
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2732.6 1873 78.5
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2655.9 1888 75.3
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2332.0 1936 67.4
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2250.3 1929 63.9
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2242.6 1936 64.8
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2242.2 1935 64.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2230.7 1922 64.4
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2227.6 1921 63.1
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2223.7 1901 65.4
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2216.8 1901 65.1
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2214.5 1902 65.4
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2207.2 1916 63.9
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2193.3 1934 64.6
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2188.3 1960 63.9
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2188.3 1936 64.4
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2182.9 1919 63.2
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2182.1 1931 63.1
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2180.6 1934 64.1
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2177.5 1921 63.1
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2176.0 1937 63.3
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2176.0 1926 63.4
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2175.6 1929 63.0
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2166.3 1921 63.0
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2157.1 1933 62.0
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2154.8 1909 63.3
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2154.0 1801 66.2
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2152.5 1933 62.5
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2152.5 1887 64.2
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2147.9 1918 62.9
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2147.1 1952 62.2
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2147.1 1912 62.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2146.7 1934 62.3
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2146.7 1933 62.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2140.9 1935 62.5
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2133.6 1918 62.6
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2129.0 1950 60.4
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2120.5 1968 64.2
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2119.0 1894 63.7
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2114.7 1919 61.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2112.4 1885 62.3
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2109.0 1917 62.7
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2109.0 1904 61.7
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2098.2 1733 66.1
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2073.9 1904 61.6
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2072.0 1915 62.1
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2067.0 1886 62.4
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2062.0 2143 56.2
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2053.1 1927 59.6
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2047.3 2025 58.5
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2039.2 1907 61.5
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2036.2 1908 61.3
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2030.8 1910 60.4
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2028.4 1771 64.9
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2027.3 1940 61.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2025.4 2132 56.9
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2024.6 1894 60.7
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2021.1 1889 61.4
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2019.2 1931 59.2
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2006.5 1888 59.6
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1988.8 1943 61.1
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1988.4 1760 63.1
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1984.5 1885 62.8
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1983.4 1924 58.8
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1981.1 1941 61.1
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1976.8 1899 61.2
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1971.4 1947 60.8
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1971.1 1941 59.1
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1970.3 1911 60.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1970.3 1899 59.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1965.7 1899 61.0
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1952.9 1910 58.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1951.8 1947 60.6
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1947.2 1988 58.2
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1945.6 1906 57.9
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1944.9 1907 58.7
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1936.4 2274 50.8
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1933.7 1899 58.8
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1930.6 1891 60.9
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1927.1 1971 56.1
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1924.1 1910 58.4
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1918.3 1919 60.8
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1891.7 1925 56.3
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1885.9 1813 59.9
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1876.7 1948 57.9
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1861.7 1389 69.7
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1699.5 1538 62.4
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1659.8 2022 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1653.3 2008 50.2
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1647.1 1858 52.3
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1646.7 1499 63.1
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1601.3 1753 52.4
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1517.7 1876 52.5
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1470.3 1879 48.2
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1464.9 1092 72.3
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1332.4 969 71.3
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1293.5 1212 62.9
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1256.1 1467 51.6
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1233.0 1249 58.8
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1221.8 1274 57.9
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1203.0 1183 59.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1092.8 881 65.7
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1082.8 966 61.6
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.1e-284 983.0 1119 56.8
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.1e-281 974.5 1416 42.2
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.1e-277 960.3 1097 55.5
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.3e-266 924.5 689 70.1
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 4.3e-254 882.9 692 67.1
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.1e-223 779.6 956 57.3
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 3.7e-213 746.9 1080 45.0
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.0e-210 738.8 1333 36.8
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 8.8e-199 699.1 875 53.9
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 8.9e-183 646.0 444 75.2
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 1.5e-150 538.9 369 74.0
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 6.2e-144 516.9 1270 31.1
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.1e-140 506.1 367 70.3
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.4e-135 488.4 397 64.2
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.6e-128 465.7 368 66.0
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.1e-99 367.5 529 44.8
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 3.9e-98 364.8 294 64.3
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 6.1e-91 340.9 286 62.2
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.5e-85 320.5 237 71.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 9.8e-81 307.0 260 65.0
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.4e-79 303.1 214 70.1
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.0e-79 300.8 198 73.7
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.9e-76 292.7 1108 25.7
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 2.3e-69 269.2 1744 24.1
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 4.0e-66 258.5 512 43.4
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.9e-64 252.3 558 37.1
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 2.0e-62 246.1 264 54.2
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.7e-56 225.3 170 67.6
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 4.1e-55 221.9 179 65.9
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.7e-53 216.5 210 58.1
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.1e-50 207.2 234 49.6
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 5.2e-50 204.9 190 58.4
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.7e-48 198.7 188 59.6
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.1e-46 193.0 272 46.0
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.1e-43 183.0 375 40.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.5e-41 176.8 246 46.3
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.9e-40 172.6 220 49.1
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 1.4e-39 170.2 167 54.5
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 1.6e-35 156.8 106 71.7
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 6.2e-35 154.8 89 78.7
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.2e-31 142.5 120 65.0
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 4.8e-27 128.6 108 66.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 2.2e-24 119.8 107 63.6
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.9e-24 119.4 110 57.3
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 4.9e-24 118.6 75 78.7
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.4e-23 117.1 87 66.7
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 3.5e-22 112.5 69 79.7
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 2.8e-19 102.8 75 73.3
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 6.2e-19 101.7 61 78.7
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 3.4e-17 95.9 56 83.9
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 3.4e-17 95.9 56 83.9
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 5.8e-17 95.1 137 45.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.0e-16 94.4 54 85.2
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.7e-16 93.6 56 82.1
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.9e-13 82.4 56 71.4
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 3.3e-12 79.3 36 94.4
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.3e-11 77.4 89 46.1
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.8e-11 76.3 48 85.4
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 2.8e-11 76.3 72 58.3
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 5.3e-10 72.0 85 44.7
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 5.8e-09 68.6 55 65.5
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.2e-08 66.6 70 57.1
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.2e-08 66.6 74 50.0
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 2.9e-08 66.2 107 42.1
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 6.1e-06 58.5 57 52.6


User provided reference genes

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