Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.0e-245 850.9 405 100.0
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.7e-224 780.4 407 92.1
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.4e-197 692.2 415 79.0
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.4e-189 665.6 389 77.4
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 7.0e-189 664.1 400 80.0
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.0e-184 648.3 400 73.2
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 9.8e-183 643.7 400 74.0
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 2.2e-182 642.5 400 73.0
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 5.9e-180 634.4 400 72.2
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 2.9e-179 632.1 399 71.4
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.9e-179 632.1 400 72.2
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 5.0e-179 631.3 399 71.9
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 5.5e-178 627.9 397 70.8
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 5.5e-178 627.9 398 72.1
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 7.2e-178 627.5 400 71.8
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 9.5e-178 627.1 400 72.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 6.1e-177 624.4 403 69.7
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.8e-176 622.9 400 70.8
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 2.3e-176 622.5 399 69.7
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 4.0e-176 621.7 400 71.0
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 6.8e-176 620.9 401 69.8
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 6.8e-176 620.9 399 69.9
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.2e-175 620.2 404 69.1
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 2.0e-175 619.4 400 70.2
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 2.0e-175 619.4 399 69.7
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 4.4e-175 618.2 400 70.8
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.3e-174 616.7 401 69.8
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 1.3e-174 616.7 400 69.5
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 4.9e-174 614.8 399 70.9
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.4e-173 612.5 430 66.3
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.1e-173 612.1 399 70.4
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 2.0e-172 609.4 400 68.8
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.0e-172 609.4 399 69.7
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 3.5e-172 608.6 399 69.9
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 4.5e-172 608.2 400 68.5
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 7.8e-172 607.4 399 69.7
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.0e-171 607.1 400 68.0
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.0e-171 607.1 399 69.4
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.3e-171 606.7 400 67.5
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.3e-171 606.7 417 68.3
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.3e-171 606.7 399 69.9
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 1.3e-171 606.7 400 68.2
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.7e-171 606.3 400 67.5
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 5.0e-171 604.7 399 69.7
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 5.0e-171 604.7 397 69.5
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 6.6e-171 604.4 400 69.5
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 6.6e-171 604.4 400 69.8
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.5e-170 603.2 400 68.0
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 4.3e-170 601.7 402 68.2
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 5.6e-170 601.3 410 68.0
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 7.3e-170 600.9 400 66.5
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 2.1e-169 599.4 401 68.8
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 2.1e-169 599.4 400 68.0
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 2.8e-169 599.0 400 67.8
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 2.8e-169 599.0 400 67.0
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 3.6e-169 598.6 402 67.2
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 3.6e-169 598.6 395 69.4
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 4.7e-169 598.2 403 67.2
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 6.1e-169 597.8 397 68.8
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.1e-169 597.8 402 66.9
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 6.1e-169 597.8 398 66.8
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 8.0e-169 597.4 397 68.3
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 5.2e-168 594.7 397 68.3
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.0e-167 592.8 387 70.5
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 3.4e-167 592.0 395 68.9
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 4.4e-167 591.7 403 67.5
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 5.7e-167 591.3 399 67.7
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.3e-166 590.1 400 66.0
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.9e-166 589.0 400 65.8
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 4.9e-166 588.2 404 65.8
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 1.8e-165 586.3 400 65.5
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 7.0e-165 584.3 405 66.7
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 7.0e-165 584.3 399 65.7
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 7.0e-165 584.3 400 65.8
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.2e-164 583.6 396 65.2
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.2e-164 583.6 395 69.4
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 3.5e-164 582.0 400 66.5
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 7.8e-164 580.9 403 66.0
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 7.8e-164 580.9 405 66.2
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.3e-163 580.1 402 65.9
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.7e-163 579.7 404 66.1
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.7e-163 579.7 401 66.8
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 2.3e-163 579.3 405 65.9
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 2.3e-163 579.3 405 65.9
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 3.0e-163 578.9 398 64.8
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 4.3e-162 575.1 403 66.3
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 5.6e-162 574.7 402 67.7
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.2e-161 573.5 404 65.8
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 8.0e-161 570.9 404 65.6
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.3e-160 569.3 414 65.9
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 2.0e-159 566.2 401 64.6
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 5.8e-159 564.7 397 66.2
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 8.3e-158 560.8 399 64.2
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 7.8e-156 554.3 358 69.8
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 9.5e-154 547.4 401 64.6
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.1e-153 546.2 355 71.0
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 7.1e-149 531.2 400 61.0
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.5e-146 523.5 357 67.2
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.8e-144 516.5 348 68.7
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 2.4e-141 506.1 412 61.4
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 3.2e-141 505.8 310 75.5
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.7e-140 502.7 353 62.9
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 3.9e-139 498.8 396 58.3
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 5.8e-135 485.0 309 71.8
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 5.8e-135 485.0 313 70.6
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.9e-122 443.4 406 54.2
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 8.1e-121 438.0 399 53.4
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.6e-119 433.0 406 51.5
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 9.9e-119 431.0 407 51.6
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 9.0e-112 407.9 366 55.5
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 4.1e-104 382.5 252 71.0
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.8e-102 375.9 438 45.0
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 3.2e-101 372.9 254 70.5
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 3.1e-88 329.7 243 62.1
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.8e-83 313.9 220 67.3
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 7.0e-72 275.4 185 61.1
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 2.2e-65 253.8 161 68.3
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.8e-62 243.0 168 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 4.2e-61 239.6 197 56.9
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 3.8e-54 216.5 130 69.2
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 5.0e-54 216.1 162 64.2
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 7.3e-53 212.2 161 62.7
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 1.5e-42 177.9 129 62.0
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 3.4e-26 123.6 456 24.8
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 5.8e-26 122.9 373 27.1
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 2.1e-23 114.4 344 27.0
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 3.5e-23 113.6 86 64.0
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 9.0e-19 99.0 369 27.4
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 6.2e-12 76.3 54 66.7
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 1.5e-10 71.6 55 65.5
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 3.8e-09 67.0 61 54.1
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 3.8e-09 67.0 61 54.1
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 3.8e-09 67.0 90 36.7
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 8.4e-09 65.9 182 28.6
CARHR094870 Cardamine hirsuta HOM05D002827 ORTHO05D003148 5.4e-08 63.2 289 27.3
Carub.0003s1925 Capsella rubella HOM05D002827 ORTHO05D003148 9.3e-08 62.4 289 27.7
AL3G32850 Arabidopsis lyrata HOM05D002827 ORTHO05D003148 4.6e-07 60.1 278 27.0
Mapoly0128s0017 Marchantia polymorpha HOM05D002827 ORTHO05D003148 2.3e-06 57.8 217 26.3
RcHm_v2.0_Chr7g0189351 Rosa chinensis HOM05D005705 ORTHO05D007152 3.9e-06 57.0 207 22.7
Dinv11204 Davidia involucrata HOM05D005705 ORTHO05D007152 6.7e-06 56.2 206 23.3
Nitab4.5_0003383g0010 Nicotiana tabacum HOM05D005705 ORTHO05D007152 6.7e-06 56.2 258 21.7


User provided reference genes

Program Settings