Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.8e-90 335.9 170 100.0
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 2.7e-86 322.0 174 95.4
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 6.6e-56 221.1 169 73.4
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.1e-55 220.3 169 74.0
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 9.8e-44 180.6 167 65.3
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 9.8e-44 180.6 167 65.3
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 3.7e-43 178.7 162 65.4
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 6.4e-43 177.9 165 65.5
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 2.4e-42 176.0 162 64.8
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.7e-41 172.6 164 61.6
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 4.6e-41 171.8 168 61.3
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.7e-40 169.9 164 61.0
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 1.7e-40 169.9 167 60.5
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 2.3e-40 169.5 164 62.2
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 5.0e-40 168.3 162 62.3
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 5.0e-40 168.3 162 61.7
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 5.0e-40 168.3 162 63.0
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 1.9e-39 166.4 161 62.7
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 3.3e-39 165.6 161 64.0
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 7.3e-39 164.5 154 63.0
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 1.2e-38 163.7 165 61.2
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 1.6e-38 163.3 150 62.7
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 4.7e-38 161.8 159 62.3
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 6.2e-38 161.4 160 60.0
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 6.2e-38 161.4 164 56.1
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 3.1e-37 159.1 146 64.4
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 4.0e-37 158.7 161 59.0
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 4.0e-37 158.7 161 59.0
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 4.0e-37 158.7 161 60.2
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 4.0e-37 158.7 162 58.6
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 4.0e-37 158.7 158 58.2
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 6.8e-37 157.9 113 73.5
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 6.8e-37 157.9 161 60.9
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 8.9e-37 157.5 161 60.9
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 1.2e-36 157.1 168 57.1
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 1.5e-36 156.8 162 59.3
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 2.0e-36 156.4 163 61.3
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 3.4e-36 155.6 175 57.7
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 4.4e-36 155.2 161 60.2
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 4.4e-36 155.2 161 60.2
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 4.4e-36 155.2 161 59.0
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 5.8e-36 154.8 161 60.2
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 5.8e-36 154.8 159 57.9
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 9.8e-36 154.1 157 56.7
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 9.8e-36 154.1 161 60.9
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.3e-35 153.7 161 60.9
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 1.7e-35 153.3 158 55.7
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 2.2e-35 152.9 164 58.5
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 3.7e-35 152.1 159 57.2
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 4.9e-35 151.8 169 55.6
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 4.9e-35 151.8 158 55.7
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 6.4e-35 151.4 161 59.6
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 6.4e-35 151.4 153 58.2
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 8.3e-35 151.0 161 59.0
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 1.1e-34 150.6 162 58.0
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 1.1e-34 150.6 162 58.0
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.4e-34 150.2 168 55.4
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 1.4e-34 150.2 161 57.1
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.9e-34 149.8 157 56.7
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.4e-34 149.4 160 59.4
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 3.2e-34 149.1 151 56.3
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 3.2e-34 149.1 155 58.7
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 5.4e-34 148.3 160 61.2
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 7.1e-34 147.9 161 56.5
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 1.2e-33 147.1 171 53.8
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 2.7e-33 146.0 156 56.4
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 2.7e-33 146.0 147 59.2
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 2.7e-33 146.0 112 69.6
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 2.7e-33 146.0 161 57.1
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 2.7e-33 146.0 161 57.1
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 3.5e-33 145.6 157 55.4
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 3.5e-33 145.6 156 55.1
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 1.3e-32 143.7 147 58.5
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 3.9e-32 142.1 156 54.5
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 3.9e-32 142.1 160 55.6
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 3.9e-32 142.1 160 55.6
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 3.9e-32 142.1 150 54.7
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 3.9e-32 142.1 141 61.0
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 5.1e-32 141.7 161 54.7
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 8.6e-32 141.0 160 55.6
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 8.6e-32 141.0 160 55.6
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 1.1e-31 140.6 161 54.7
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 1.1e-31 140.6 161 54.7
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 1.1e-31 140.6 104 71.2
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.1e-31 140.6 141 58.2
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 1.1e-31 140.6 148 56.8
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 1.5e-31 140.2 160 55.0
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 1.5e-31 140.2 162 52.5
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 1.9e-31 139.8 160 55.0
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 1.9e-31 139.8 160 55.0
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 1.9e-31 139.8 151 55.6
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 2.5e-31 139.4 103 68.0
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 4.3e-31 138.7 160 54.4
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 4.3e-31 138.7 144 58.3
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 9.5e-31 137.5 106 69.8
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 9.5e-31 137.5 105 66.7
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 1.2e-30 137.1 150 52.7
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.1e-30 136.3 104 70.2
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 2.1e-30 136.3 103 69.9
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 3.6e-30 135.6 162 54.3
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 4.7e-30 135.2 145 57.9
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 4.7e-30 135.2 107 68.2
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 4.7e-30 135.2 161 55.9
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.8e-29 133.3 104 65.4
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 2.3e-29 132.9 152 53.9
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 1.5e-28 130.2 100 70.0
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 7.6e-28 127.9 114 62.3
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 1.7e-27 126.7 104 63.5
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 4.9e-27 125.2 107 62.6
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 5.4e-26 121.7 101 63.4
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.2e-25 120.6 104 62.5
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 6.0e-25 118.2 108 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.3e-24 117.1 108 56.5
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 3.0e-24 115.9 130 53.1
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 7.3e-23 111.3 102 60.8
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 9.6e-23 110.9 147 42.2
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 2.4e-21 106.3 107 58.9
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 4.0e-21 105.5 120 47.5
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 8.9e-21 104.4 107 62.6
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 2.6e-20 102.8 102 56.9
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 2.1e-17 93.2 157 41.4
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 7.8e-17 91.3 93 50.5
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 1.7e-16 90.1 71 59.2
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.1e-15 87.4 104 51.0
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 1.5e-12 77.0 67 65.7
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 3.8e-11 72.4 45 73.3
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 1.2e-09 67.4 74 54.1
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 4.6e-09 65.5 70 45.7
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 1.3e-08 63.9 100 40.0
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 3.9e-08 62.4 83 38.6
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 5.1e-08 62.0 66 51.5
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 6.7e-08 61.6 104 36.5
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 4.3e-07 58.9 70 42.9
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 1.3e-06 57.4 98 33.7
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 1.6e-06 57.0 70 41.4
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 2.8e-06 56.2 67 44.8
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 2.8e-06 56.2 70 41.4
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 3.7e-06 55.8 105 35.2
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 3.7e-06 55.8 107 35.5
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 3.7e-06 55.8 107 35.5
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 8.1e-06 54.7 70 41.4
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 8.1e-06 54.7 99 36.4


User provided reference genes

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