Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 0.0e+00 1295.8 654 100.0
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 0.0e+00 1246.1 654 96.2
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 1.4e-300 1035.8 655 81.5
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.5e-273 946.0 620 77.6
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 2.4e-255 885.6 654 70.8
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 6.6e-213 744.6 663 58.2
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 9.5e-212 740.7 649 59.8
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.6e-211 740.0 662 58.6
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 1.4e-210 736.9 650 58.9
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.5e-209 733.4 667 58.2
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.9e-208 729.2 668 57.8
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.4e-207 726.9 668 57.3
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 3.2e-207 725.7 665 57.3
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.6e-206 723.4 657 58.3
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 2.0e-206 723.0 655 58.8
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 1.5e-204 716.8 655 58.5
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.5e-204 716.8 665 57.7
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 1.5e-204 716.8 667 56.7
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 9.5e-204 714.1 660 56.7
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 3.6e-203 712.2 657 56.6
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.6e-203 712.2 651 57.8
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 6.2e-203 711.4 656 58.2
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 6.2e-203 711.4 661 57.8
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.4e-202 710.3 656 58.1
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 2.3e-202 709.5 670 56.6
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.5e-201 706.8 661 57.6
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 2.0e-201 706.4 665 57.0
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 2.6e-201 706.1 659 56.6
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 2.6e-201 706.1 665 56.8
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 3.4e-201 705.7 654 57.5
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 5.8e-201 704.9 665 56.8
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.7e-200 702.2 673 56.0
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.9e-199 699.9 672 56.5
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.1e-199 698.7 677 55.7
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.1e-199 698.7 677 55.7
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 5.4e-199 698.4 655 56.9
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 9.2e-199 697.6 659 56.1
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.6e-198 696.8 654 57.0
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.7e-198 696.0 630 58.7
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 6.6e-197 691.4 654 56.4
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 6.6e-197 691.4 758 52.0
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 2.5e-196 689.5 658 55.3
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.5e-196 689.5 670 54.8
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 3.3e-196 689.1 666 55.9
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 3.3e-196 689.1 661 54.8
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 5.6e-196 688.3 663 54.6
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 9.5e-196 687.6 654 56.0
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 1.8e-194 683.3 665 54.6
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 3.1e-194 682.6 659 55.4
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 1.5e-193 680.2 665 54.6
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 2.0e-193 679.9 660 55.0
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 8.3e-192 674.5 635 57.3
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.2e-190 670.6 664 55.3
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 4.6e-190 668.7 639 55.7
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 6.6e-189 664.8 661 53.9
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 9.5e-188 661.0 666 53.3
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 9.5e-188 661.0 657 53.9
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 1.6e-187 660.2 661 52.8
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.7e-187 658.7 668 54.0
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 4.7e-187 658.7 662 53.8
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 2.3e-186 656.4 660 53.0
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 8.9e-186 654.4 657 53.6
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 2.0e-185 653.3 644 54.2
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.4e-183 647.1 662 52.9
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.1e-183 644.8 908 43.0
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.2e-182 644.0 658 53.6
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 1.2e-182 644.0 581 58.2
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 8.6e-181 637.9 660 52.4
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.1e-180 637.5 631 53.6
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 1.9e-180 636.7 654 54.0
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 9.6e-180 634.4 674 51.9
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 1.2e-179 634.0 663 53.5
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 1.2e-179 634.0 661 52.5
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 6.2e-179 631.7 648 51.2
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 6.2e-179 631.7 655 53.6
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 1.1e-178 630.9 656 52.0
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 4.0e-178 629.0 656 51.4
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 6.9e-178 628.2 654 51.7
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 1.1e-175 620.9 649 51.3
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 3.2e-175 619.4 739 47.4
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 5.4e-175 618.6 648 51.1
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 7.1e-175 618.2 649 51.3
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 2.7e-174 616.3 653 50.7
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 2.7e-174 616.3 654 50.3
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 7.8e-174 614.8 651 49.8
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.7e-173 613.6 670 50.4
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 1.7e-173 613.6 658 50.3
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 2.3e-173 613.2 657 50.2
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 2.3e-173 613.2 648 50.8
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 1.1e-172 610.9 667 49.6
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 1.6e-171 607.1 656 49.7
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 6.2e-171 605.1 654 50.5
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 2.0e-169 600.1 664 49.7
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 6.4e-168 595.1 659 49.2
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 3.4e-161 572.8 530 56.8
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 7.6e-161 571.6 671 47.7
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.3e-157 560.8 663 47.1
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 1.8e-157 560.5 662 46.7
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 5.7e-148 528.9 667 43.8
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 2.8e-139 500.0 678 45.6
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.2e-137 494.6 554 47.8
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 1.6e-134 484.2 703 40.1
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 3.2e-127 459.9 497 50.5
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 4.2e-127 459.5 649 41.8
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 1.1e-114 418.3 541 44.4
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 4.0e-85 320.1 715 32.0
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 3.2e-82 310.5 295 56.9
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 1.8e-77 294.7 644 30.9
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 5.2e-77 293.1 663 33.3
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 6.0e-73 279.6 541 35.5
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.4e-69 267.7 370 43.8
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.2e-58 230.7 162 72.8
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 4.0e-45 187.2 146 69.9
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 5.6e-39 166.8 458 29.3
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 4.2e-34 150.6 348 31.9
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 1.2e-33 149.1 135 57.8
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 4.3e-31 140.6 162 45.1
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.3e-27 129.0 156 51.9
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 2.3e-24 118.2 247 34.0
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 4.1e-21 107.5 98 58.2
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.6e-17 94.4 58 72.4
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 8.8e-16 89.7 48 93.8
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.6e-15 88.2 110 42.7
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 9.7e-15 86.3 57 71.9
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 4.8e-14 84.0 85 52.9
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 2.2e-11 75.1 49 71.4
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 8.0e-09 66.6 64 53.1
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 3.9e-08 64.3 60 53.3
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 7.4e-07 60.1 37 78.4
AUR62038683 Chenopodium quinoa HOM05D006331 ORTHO05D137630 3.7e-06 57.8 31 90.3
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.7e-06 57.8 37 75.7


User provided reference genes

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