Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.7e-105 386.0 190 100.0
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 2.4e-99 365.5 190 93.7
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 5.4e-99 364.4 179 99.4
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 2.6e-93 345.5 190 87.9
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.3e-92 343.2 179 92.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.2e-85 320.1 190 80.5
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.5e-80 303.1 190 77.4
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 7.3e-80 300.8 190 77.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 7.3e-80 300.8 190 77.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 7.3e-80 300.8 190 77.9
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 7.3e-80 300.8 190 75.3
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.6e-79 299.7 190 77.9
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.6e-79 299.7 190 77.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.1e-79 299.3 190 77.4
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.1e-79 299.3 190 77.4
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.8e-79 298.9 190 75.3
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.6e-79 298.5 190 76.8
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 4.7e-79 298.1 190 76.3
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 4.7e-79 298.1 190 77.4
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 6.2e-79 297.7 190 75.3
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 8.1e-79 297.4 190 76.8
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 8.1e-79 297.4 190 77.4
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.1e-78 297.0 190 74.7
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-78 296.6 190 75.8
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.4e-78 296.6 190 75.8
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 76.3
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 76.3
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 76.3
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 76.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 74.2
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 76.3
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.8e-78 296.2 190 74.7
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.3e-78 295.8 190 74.7
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-78 295.4 190 76.3
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 3.1e-78 295.4 190 75.8
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 4.0e-78 295.0 190 76.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 5.2e-78 294.7 190 75.3
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 6.8e-78 294.3 190 75.8
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 8.9e-78 293.9 190 75.3
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 75.3
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 74.7
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 74.2
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 75.8
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 75.8
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 74.7
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 75.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.5e-77 293.1 190 74.2
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.0e-77 292.7 190 74.2
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.0e-77 292.7 190 73.7
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 75.3
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 75.3
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 75.3
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 75.3
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 74.7
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 74.2
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 74.2
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 3.4e-77 292.0 190 73.7
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 3.4e-77 292.0 190 74.2
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 4.4e-77 291.6 190 74.2
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 4.4e-77 291.6 190 75.3
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.4e-77 291.6 190 75.3
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 5.8e-77 291.2 190 75.8
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 5.8e-77 291.2 190 75.8
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 5.8e-77 291.2 190 74.7
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 5.8e-77 291.2 190 74.7
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 73.7
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 73.7
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 7.5e-77 290.8 189 74.1
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 9.8e-77 290.4 190 73.2
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.3e-76 290.0 190 74.7
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.3e-76 290.0 191 74.3
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.3e-76 290.0 190 74.2
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.3e-76 290.0 190 74.2
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.3e-76 290.0 190 74.2
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.3e-76 290.0 190 72.6
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.7e-76 289.7 190 73.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.7e-76 289.7 190 73.2
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.7e-76 289.7 190 73.7
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 73.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.2e-76 289.3 190 74.7
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.9e-76 288.9 190 74.7
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 3.7e-76 288.5 190 75.3
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 3.7e-76 288.5 190 74.7
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 4.9e-76 288.1 190 74.7
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 4.9e-76 288.1 190 74.7
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 6.4e-76 287.7 190 74.2
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 6.4e-76 287.7 190 74.2
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 8.3e-76 287.3 190 71.6
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-75 287.0 190 73.2
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.1e-75 287.0 188 72.9
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.4e-75 286.6 188 72.9
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.9e-75 286.2 190 72.1
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 2.4e-75 285.8 190 74.2
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 2.4e-75 285.8 190 74.2
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 2.4e-75 285.8 188 72.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.2e-75 285.4 190 72.6
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 3.2e-75 285.4 190 73.2
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.2e-75 285.4 188 72.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.2e-75 285.4 188 72.9
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.1e-75 285.0 190 73.7
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 5.4e-75 284.6 190 73.7
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 9.2e-75 283.9 190 72.6
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 9.2e-75 283.9 190 73.7
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.6e-74 283.1 190 72.6
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.1e-74 282.7 190 71.1
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.7e-74 282.3 188 72.3
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 3.5e-74 282.0 191 73.3
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 3.5e-74 282.0 182 75.3
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 3.0e-73 278.9 190 71.1
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 3.0e-73 278.9 190 73.2
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.1e-73 278.1 190 72.6
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-72 276.9 190 70.0
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.5e-72 276.6 190 72.1
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.5e-72 276.6 191 72.8
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.5e-72 275.8 181 72.9
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 5.6e-72 274.6 190 69.5
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 9.5e-72 273.9 191 71.7
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 2.8e-71 272.3 191 73.8
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 8.1e-71 270.8 191 71.7
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.1e-70 268.9 171 74.3
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 6.8e-70 267.7 190 71.6
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.9e-70 267.3 182 69.2
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 9.9e-69 263.8 190 67.4
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.3e-68 263.5 190 67.4
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.2e-68 262.7 190 67.4
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 3.7e-68 261.9 190 66.8
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.1e-67 258.5 176 71.0
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.4e-67 258.1 190 67.4
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 2.7e-66 255.8 189 64.6
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 6.0e-66 254.6 190 66.3
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.9e-64 249.6 189 63.0
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.6e-63 245.4 191 63.9
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 3.6e-63 245.4 191 63.9
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 6.8e-62 241.1 190 61.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 6.8e-62 241.1 190 62.6
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.5e-61 240.0 190 66.8
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 2.0e-61 239.6 179 68.7
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.6e-61 239.2 189 63.5
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 4.4e-61 238.4 190 60.5
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 7.6e-61 237.7 190 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.7e-60 236.5 190 60.0
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 4.2e-59 231.9 190 63.7
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 6.6e-57 224.6 183 60.7
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.1e-54 217.2 190 54.2
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 4.0e-54 215.3 179 59.8
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.7e-52 209.9 168 65.5
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.2e-44 183.0 190 52.6
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.2e-42 177.2 189 46.0
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.0e-41 174.1 121 67.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.1e-38 164.1 115 67.8
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.4e-38 162.9 109 73.4
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.1e-35 151.4 175 49.1
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.3e-31 138.3 190 43.7
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 6.3e-31 138.3 132 53.8
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.8e-30 136.7 123 60.2
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.5e-29 132.1 85 75.3
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 7.9e-26 121.3 78 73.1
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 4.1e-22 109.0 66 75.8
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 6.7e-17 91.7 92 54.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.1e-11 74.3 97 47.4
Cfa022336 Carpinus fangiana HOM05D004362 ORTHO05D122733 3.1e-06 56.2 75 42.7


User provided reference genes

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