Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 3.9e-251 870.9 425 100.0
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 8.8e-243 843.2 446 93.5
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 7.5e-210 733.8 437 84.9
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 1.7e-201 706.1 437 81.7
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 8.3e-201 703.7 445 79.3
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 4.1e-200 701.4 438 79.9
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 3.5e-191 671.8 403 80.4
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 6.0e-191 671.0 419 78.3
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.0e-190 670.2 419 78.5
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 6.6e-190 667.5 419 77.1
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 4.3e-189 664.8 417 78.2
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 5.6e-189 664.5 417 77.2
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 5.6e-189 664.5 418 78.0
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 5.6e-189 664.5 439 75.2
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 9.6e-189 663.7 418 77.3
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 9.6e-189 663.7 414 77.1
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 1.2e-188 663.3 415 79.3
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 2.1e-188 662.5 419 77.3
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 3.6e-188 661.8 418 77.3
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 4.7e-188 661.4 422 77.3
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 8.1e-188 660.6 417 77.9
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 4.0e-187 658.3 412 77.2
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 9.0e-187 657.1 413 76.8
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 1.5e-186 656.4 418 76.3
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 1.5e-186 656.4 418 77.3
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 3.4e-186 655.2 413 77.0
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 4.4e-186 654.8 417 76.5
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 1.7e-185 652.9 409 76.8
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 2.2e-185 652.5 415 75.7
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 3.8e-185 651.7 418 76.3
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 4.9e-185 651.4 414 75.6
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 2.4e-184 649.0 418 75.6
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 4.2e-184 648.3 414 75.6
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 5.4e-184 647.9 423 75.2
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 5.4e-184 647.9 416 76.0
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 7.1e-184 647.5 418 75.8
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 1.2e-183 646.7 415 76.1
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 1.6e-183 646.4 413 76.3
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 1.6e-183 646.4 418 75.4
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 1.6e-183 646.4 418 74.9
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 2.7e-183 645.6 412 76.5
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 6.0e-183 644.4 417 75.3
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 7.8e-183 644.0 418 74.4
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 1.3e-182 643.3 423 75.2
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 2.3e-182 642.5 415 75.4
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 2.3e-182 642.5 420 75.2
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 3.0e-182 642.1 414 76.6
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 1.5e-181 639.8 412 75.5
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.5e-181 639.8 414 75.1
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 2.5e-181 639.0 434 73.0
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 3.3e-181 638.6 426 73.0
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 4.3e-181 638.3 414 75.1
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 7.3e-181 637.5 414 74.9
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 9.6e-181 637.1 414 74.9
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 1.6e-180 636.3 382 78.5
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 2.1e-180 636.0 422 73.5
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 2.1e-180 636.0 422 73.5
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 2.8e-180 635.6 382 78.8
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 2.8e-180 635.6 413 75.1
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 3.6e-180 635.2 414 75.1
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 4.8e-180 634.8 419 74.0
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 6.2e-180 634.4 414 74.4
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 8.1e-180 634.0 417 75.3
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 8.1e-180 634.0 403 75.4
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 1.1e-179 633.6 413 75.1
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 4.0e-179 631.7 408 74.8
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 4.5e-178 628.2 424 71.9
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 3.8e-177 625.2 416 75.0
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 8.4e-177 624.0 423 72.6
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 1.1e-176 623.6 423 72.6
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 2.4e-176 622.5 417 74.6
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 3.2e-176 622.1 412 74.0
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 3.2e-176 622.1 426 71.8
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 1.2e-175 620.2 417 74.1
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 1.2e-175 620.2 416 72.8
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 1.2e-175 620.2 379 77.6
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 4.6e-175 618.2 417 73.1
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 4.6e-175 618.2 394 74.4
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 9.6e-173 610.5 407 74.0
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 3.7e-172 608.6 408 71.6
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 6.2e-172 607.8 348 81.6
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 1.8e-171 606.3 414 70.5
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 2.4e-171 605.9 362 77.9
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 6.9e-171 604.4 433 69.7
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 6.9e-171 604.4 364 78.0
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 2.6e-170 602.4 426 70.4
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 4.5e-170 601.7 411 72.0
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 5.8e-170 601.3 407 74.2
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 7.6e-170 600.9 428 69.9
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 3.8e-169 598.6 407 72.7
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 3.8e-169 598.6 407 72.7
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 3.8e-169 598.6 418 71.5
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 8.4e-169 597.4 403 72.7
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 8.4e-169 597.4 403 73.0
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 1.1e-168 597.0 407 73.0
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 1.1e-168 597.0 407 72.2
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.4e-168 596.7 429 68.8
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 1.9e-168 596.3 407 73.5
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 3.2e-168 595.5 407 72.5
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 4.2e-168 595.1 403 72.5
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 4.2e-168 595.1 407 71.7
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 5.5e-168 594.7 408 72.3
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 5.5e-168 594.7 407 71.7
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 5.5e-168 594.7 387 74.2
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 1.2e-167 593.6 407 71.7
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 4.6e-167 591.7 407 71.5
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 3.9e-166 588.6 406 71.7
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 1.9e-165 586.3 611 53.5
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 7.4e-165 584.3 378 74.1
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.6e-164 583.2 404 71.0
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 2.8e-164 582.4 377 73.5
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 4.6e-159 565.1 326 81.3
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 4.6e-159 565.1 417 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 4.3e-157 558.5 362 74.0
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 6.3e-156 554.7 363 73.8
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 1.4e-147 526.9 363 67.5
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 3.1e-147 525.8 382 66.8
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 3.2e-144 515.8 292 83.2
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 1.4e-134 483.8 378 62.2
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 9.7e-133 477.6 312 73.1
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 6.5e-129 464.9 365 61.6
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 9.4e-128 461.1 274 81.8
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 1.0e-126 457.6 390 58.7
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 1.9e-120 436.8 361 58.7
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 5.2e-110 402.1 286 67.5
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 8.9e-110 401.4 254 75.2
TAR627G0383 Trochodendron aralioides HOM05D004132 ORTHO05D018522 5.8e-101 372.1 190 90.5
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 2.0e-98 363.6 358 54.2
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.7e-98 363.2 266 66.9
Oeu018076.1 Olea europaea HOM05D004132 ORTHO05D006273 1.7e-92 344.0 174 89.7
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 6.0e-90 335.5 176 84.7
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 4.0e-86 322.8 212 72.6
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 1.6e-71 274.2 205 68.3
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 3.1e-70 270.0 410 38.3
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 4.4e-69 266.2 168 73.8
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 7.8e-66 255.4 378 38.1
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 3.0e-65 253.4 179 67.6
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 4.3e-56 223.0 155 68.4
GSVIVG01020308001 Vitis vinifera HOM05D004132 ORTHO05D018522 1.3e-52 211.5 110 89.1
HanXRQChr09g0260401 Helianthus annuus HOM05D004132 ORTHO05D018522 1.2e-42 178.3 89 88.8
SEGI_34381 Sequoiadendron giganteum HOM05D004132 ORTHO05D018522 8.7e-41 172.2 89 86.5
TAR627G1059 Trochodendron aralioides HOM05D004132 ORTHO05D006273 3.3e-40 170.2 155 58.1
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 1.4e-33 148.3 110 66.4
Hma1.2p1_0634F.1_g192870 Hydrangea macrophylla HOM05D004132 ORTHO05D018840 7.4e-32 142.5 114 63.2
Oeu050047.1 Olea europaea HOM05D004132 ORTHO05D018840 1.8e-30 137.9 119 58.8
Rhsim01G0214100 Rhododendron simsii HOM05D004132 ORTHO05D018840 1.5e-29 134.8 111 59.5
Duzib212G0992 Durio zibethinus HOM05D004132 ORTHO05D006273 2.5e-27 127.5 87 72.4
Rhsim08G0147200 Rhododendron simsii HOM05D004132 ORTHO05D018840 3.2e-27 127.1 102 59.8
Duzib212G0380 Durio zibethinus HOM05D004132 ORTHO05D035098 4.2e-27 126.7 132 56.1
BolC6t37679H Brassica oleracea HOM05D004132 ORTHO05D006273 6.7e-25 119.4 185 42.7
Rhsim02G0198900 Rhododendron simsii HOM05D004132 ORTHO05D018840 6.7e-25 119.4 81 70.4
A07p23940 Brassica napus HOM05D000122 ORTHO05D000139 4.8e-23 113.2 160 42.5
AL4G21280 Arabidopsis lyrata HOM05D004132 ORTHO05D000124 1.8e-22 111.3 107 54.2
HanXRQChr09g0260421 Helianthus annuus HOM05D004132 ORTHO05D006273 1.5e-21 108.2 136 48.5
arahy.Tifrunner.gnm1.ann1.0UIU5S Arachis hypogaea HOM05D004132 ORTHO05D018522 7.7e-21 105.9 54 85.2
QL04p095610 Quercus lobata HOM05D004132 ORTHO05D018522 1.9e-19 101.3 152 42.8
BcaC09g51753 Brassica carinata HOM05D004132 ORTHO05D000912 4.2e-19 100.1 69 71.0
HanXRQChr16g0516741 Helianthus annuus HOM05D004132 ORTHO05D018522 4.2e-19 100.1 54 81.5
Rhsim06G0102600 Rhododendron simsii HOM05D004132 ORTHO05D018840 3.9e-17 93.6 79 59.5
RcHm_v2.0_Chr3g0486391 Rosa chinensis HOM05D004132 ORTHO05D006273 1.5e-16 91.7 52 80.8
TPR.G19642 Trifolium pratense HOM05D004132 ORTHO05D018522 9.1e-14 82.4 39 97.4
GSVIVG01020310001 Vitis vinifera HOM05D004132 ORTHO05D006273 6.5e-12 76.3 43 69.8
arahy.Tifrunner.gnm1.ann1.DI7635 Arachis hypogaea HOM05D004132 ORTHO05D006273 4.2e-11 73.6 35 85.7
Medtr8g046320 Medicago truncatula HOM05D004132 ORTHO05D261654 7.2e-11 72.8 61 57.4
HanXRQChr09g0260411 Helianthus annuus HOM05D004132 ORTHO05D006273 3.6e-10 70.5 40 75.0
arahy.Tifrunner.gnm1.ann1.S74BYY Arachis hypogaea HOM05D004132 ORTHO05D006273 6.1e-10 69.7 35 85.7
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 1.4e-06 58.5 246 27.6
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 1.4e-06 58.5 246 27.6


User provided reference genes

Program Settings