Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.4e-284 981.5 483 100.0
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.3e-279 964.9 483 98.3
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.3e-279 964.9 483 98.3
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 4.2e-265 917.5 483 92.3
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 1.6e-264 915.6 483 92.8
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.1e-246 856.3 483 86.3
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 2.4e-236 822.0 483 83.0
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 1.5e-235 819.3 483 82.8
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 2.9e-234 815.1 483 82.0
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 5.0e-234 814.3 483 82.2
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 6.1e-232 807.4 483 81.8
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 1.4e-231 806.2 483 82.2
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 1.4e-231 806.2 487 81.1
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 6.7e-231 803.9 484 82.2
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 2.6e-230 802.0 482 81.5
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.6e-230 802.0 483 81.8
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 4.4e-230 801.2 484 82.0
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 5.7e-230 800.8 483 81.4
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 5.7e-230 800.8 483 79.9
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 5.7e-230 800.8 482 80.9
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 9.7e-230 800.0 485 81.0
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 9.7e-230 800.0 483 81.2
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.3e-229 799.7 483 81.8
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 2.2e-229 798.9 480 81.0
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 2.8e-229 798.5 484 81.4
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.7e-229 798.1 482 80.7
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 4.8e-229 797.7 483 81.2
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 4.8e-229 797.7 483 81.6
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 8.2e-229 797.0 482 81.1
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 1.1e-228 796.6 484 79.5
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 3.1e-228 795.0 484 81.4
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 4.1e-228 794.7 483 80.7
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 9.1e-228 793.5 483 80.1
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 9.1e-228 793.5 484 80.8
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.2e-227 793.1 483 81.4
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 2.0e-227 792.3 483 79.7
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 5.9e-227 790.8 483 80.3
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 1.7e-226 789.3 494 78.3
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 2.2e-226 788.9 482 80.3
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 2.9e-226 788.5 482 79.7
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 1.9e-225 785.8 484 78.5
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 1.6e-224 782.7 483 79.3
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 2.7e-224 781.9 482 79.3
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 6.1e-224 780.8 485 79.0
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 6.1e-224 780.8 483 79.1
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 8.0e-224 780.4 483 79.7
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 1.0e-223 780.0 484 79.3
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.5e-222 776.2 481 80.2
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 3.3e-222 775.0 480 79.8
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 4.4e-222 774.6 480 78.3
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 4.4e-222 774.6 484 80.2
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 1.7e-221 772.7 485 79.6
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.8e-221 771.9 483 78.7
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 2.8e-221 771.9 488 78.5
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 3.7e-221 771.5 514 75.7
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 6.3e-221 770.8 483 78.7
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.1e-220 770.0 483 78.5
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.4e-220 769.6 483 78.5
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.8e-220 769.2 485 79.2
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.4e-220 768.8 484 79.1
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.1e-220 768.1 483 78.3
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 5.3e-220 767.7 483 79.1
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 9.1e-220 766.9 483 78.9
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 9.1e-220 766.9 481 79.0
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.2e-219 766.5 485 79.0
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 1.6e-219 766.1 481 78.8
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 4.5e-219 764.6 484 78.9
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 4.5e-219 764.6 483 78.1
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 5.9e-219 764.2 481 78.0
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 5.9e-219 764.2 493 77.7
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 7.7e-219 763.8 484 77.9
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.7e-218 762.7 483 78.5
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.7e-218 762.7 419 86.9
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.7e-218 762.7 493 77.5
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.8e-218 761.5 484 78.7
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 5.0e-218 761.1 484 77.5
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 7.2e-217 757.3 487 77.4
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 9.4e-217 756.9 484 77.3
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 2.1e-216 755.7 483 76.4
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 4.7e-216 754.6 488 78.3
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 8.0e-216 753.8 484 77.1
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 1.0e-215 753.4 482 77.2
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.4e-215 753.1 493 77.1
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.2e-214 750.0 486 78.2
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.2e-214 750.0 486 78.2
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 2.6e-214 748.8 481 78.4
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 7.5e-214 747.3 484 77.1
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 9.8e-214 746.9 484 77.7
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 1.3e-213 746.5 481 77.5
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 1.4e-212 743.0 391 90.8
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 1.4e-212 743.0 484 76.7
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.8e-212 742.7 480 77.1
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 3.1e-212 741.9 394 90.1
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 7.0e-212 740.7 480 76.9
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 3.5e-211 738.4 480 76.5
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 1.7e-210 736.1 490 75.7
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 3.3e-209 731.9 486 76.3
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.3e-205 719.9 486 73.9
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.2e-200 703.4 453 77.0
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 4.0e-199 698.4 445 78.2
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 7.3e-193 677.6 480 72.1
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 2.1e-192 676.0 410 78.3
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 2.1e-192 676.0 481 70.5
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 4.7e-192 674.9 423 75.4
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 6.2e-192 674.5 412 76.5
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 1.6e-187 659.8 389 78.9
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 2.1e-176 622.9 383 79.1
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 1.5e-174 616.7 404 71.8
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.4e-172 609.4 431 72.9
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 2.1e-168 596.3 479 65.3
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 6.0e-163 578.2 399 66.2
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.5e-161 573.5 378 68.3
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 6.7e-154 548.1 289 90.3
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 2.1e-152 543.1 289 89.6
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.2e-140 502.7 342 72.2
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 5.7e-137 491.9 276 82.6
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-103 381.3 237 78.9
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 5.0e-101 372.5 272 68.4
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 5.8e-81 305.8 171 84.2
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.0e-61 241.9 196 63.3
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.0e-57 227.6 135 81.5
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 2.6e-57 227.3 130 82.3
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.7e-56 224.6 136 80.1
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 1.4e-47 194.9 140 74.3
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 1.1e-44 185.3 157 61.1
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 1.8e-34 151.4 94 78.7
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 7.9e-30 136.0 105 64.8
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 4.6e-14 83.6 59 67.8
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 6.3e-11 73.2 290 25.9
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 4.1e-10 70.5 334 26.3
Sopen08g030690 Solanum pennellii HOM05D000776 ORTHO05D001624 1.7e-08 65.1 323 25.4
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 2.2e-08 64.7 158 29.7
Solyc08g082440.3 Solanum lycopersicum HOM05D000776 ORTHO05D001624 2.2e-08 64.7 323 25.1
Ah.12g057480 Amaranthus hybridus HOM05D000776 ORTHO05D001624 2.9e-08 64.3 300 25.0
Ciclev10001690m.g Citrus clementina HOM05D000776 ORTHO05D001624 6.5e-08 63.2 332 25.9
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.9e-07 61.6 138 30.4
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 3.2e-07 60.8 127 31.5
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 5.5e-07 60.1 161 26.1
Cc06_g03150 Coffea canephora HOM05D000739 ORTHO05D001171 7.2e-07 59.7 356 22.5
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 1.2e-06 58.9 161 26.1
TPR.G5954 Trifolium pratense HOM05D000776 ORTHO05D001624 2.7e-06 57.8 157 26.8
Aqoxy3G04099 Aquilegia oxysepala HOM05D000776 ORTHO05D002281 4.7e-06 57.0 184 29.9
Lalb_Chr05g0224991 Lupinus albus HOM05D000776 ORTHO05D001624 4.7e-06 57.0 159 25.8
Medtr4g134490 Medicago truncatula HOM05D000776 ORTHO05D001624 4.7e-06 57.0 159 26.4


User provided reference genes

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