Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.7e-214 748.4 391 100.0
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 6.5e-192 674.1 391 90.5
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 9.2e-162 573.9 393 79.6
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.2e-145 520.4 397 71.0
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 1.1e-133 480.7 393 68.7
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 3.0e-112 409.5 400 57.8
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 4.3e-111 405.6 401 57.9
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 7.4e-111 404.8 399 57.6
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.6e-110 403.7 399 57.6
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 1.6e-110 403.7 401 57.1
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 6.9e-109 398.3 402 57.2
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 1.2e-108 397.5 409 56.5
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 1.2e-108 397.5 399 56.9
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 5.8e-108 395.2 398 56.8
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 5.8e-108 395.2 400 57.2
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 1.3e-107 394.0 398 56.5
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.3e-107 394.0 401 56.4
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.7e-107 393.7 401 56.1
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 1.7e-107 393.7 401 56.1
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 2.2e-107 393.3 399 55.6
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 8.4e-107 391.3 401 55.9
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 3.2e-106 389.4 399 56.6
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.2e-106 389.0 401 55.6
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.2e-105 387.5 402 55.0
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 2.1e-105 386.7 398 56.3
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 6.0e-105 385.2 392 55.6
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 5.1e-104 382.1 397 54.4
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 5.1e-104 382.1 400 56.5
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 6.3e-102 375.2 400 54.5
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 8.2e-102 374.8 399 52.9
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.4e-101 374.0 402 53.5
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.4e-101 374.0 399 52.9
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 1.8e-101 373.6 401 55.4
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 9.0e-101 371.3 397 53.4
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 1.2e-100 370.9 397 52.9
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 2.0e-100 370.2 398 51.8
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 3.4e-100 369.4 397 52.9
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 3.4e-100 369.4 397 53.1
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 4.5e-100 369.0 394 54.6
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 5.9e-100 368.6 401 53.9
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 7.6e-100 368.2 392 53.1
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 1.3e-99 367.5 398 53.8
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.2e-99 366.7 399 52.6
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 3.8e-99 365.9 400 54.0
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 6.5e-99 365.2 398 51.5
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 1.4e-98 364.0 398 53.0
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 5.5e-98 362.1 399 51.4
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.7e-97 359.8 399 52.1
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 6.1e-97 358.6 392 53.1
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 2.3e-96 356.7 398 54.3
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 3.9e-96 355.9 398 51.5
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 1.1e-95 354.4 399 50.9
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 3.3e-95 352.8 393 51.9
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 9.7e-95 351.3 398 51.3
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 1.6e-94 350.5 399 52.4
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 4.8e-94 349.0 403 51.9
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.1e-93 347.8 398 51.3
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 2.6e-92 343.2 402 52.5
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 2.6e-92 343.2 399 51.4
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 3.4e-92 342.8 403 51.4
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 1.0e-91 341.3 395 52.2
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 1.0e-91 341.3 401 51.1
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 6.5e-91 338.6 397 50.9
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 3.2e-90 336.3 357 51.5
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 1.2e-89 334.3 395 51.4
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 1.0e-88 331.3 402 47.8
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.8e-88 330.5 400 50.0
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 3.0e-88 329.7 400 50.5
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 5.1e-88 328.9 409 49.9
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 2.5e-87 326.6 418 50.0
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 3.3e-87 326.2 402 46.8
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 4.3e-87 325.9 401 46.9
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.3e-86 324.3 402 47.5
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 2.2e-86 323.6 412 48.1
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 2.8e-86 323.2 402 47.5
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.4e-85 320.9 400 46.8
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.7e-83 313.9 402 45.8
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.7e-83 313.9 402 45.8
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 1.4e-82 310.8 402 45.8
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 1.4e-82 310.8 398 48.7
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 9.4e-82 308.1 402 45.3
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 3.6e-81 306.2 406 44.8
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 3.0e-80 303.1 406 44.3
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 5.1e-80 302.4 406 44.6
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 5.1e-80 302.4 406 44.6
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 6.7e-80 302.0 403 45.7
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 1.3e-78 297.7 407 43.7
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 1.4e-77 294.3 263 61.6
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 2.4e-77 293.5 426 43.4
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 2.0e-76 290.4 346 48.8
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 2.0e-76 290.4 406 43.6
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 5.0e-75 285.8 402 44.8
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.0e-64 251.5 265 49.1
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 1.8e-64 250.8 302 50.3
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 2.0e-63 247.3 406 40.9
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 1.0e-59 235.0 329 46.2
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.0e-59 235.0 200 61.0
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 2.5e-50 203.8 244 54.5
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 2.8e-49 200.3 411 35.0
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 8.3e-46 188.7 395 36.2
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.8e-45 187.6 166 60.8
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 1.7e-43 181.0 185 52.4
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 4.4e-39 166.4 189 55.0
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 4.9e-38 162.9 392 33.9
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.2e-36 158.3 251 41.8
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 1.2e-36 158.3 184 53.8
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 3.5e-36 156.8 301 37.9
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 6.0e-36 156.0 187 54.0
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 7.8e-36 155.6 164 52.4
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 1.3e-35 154.8 395 33.4
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 3.7e-30 136.7 161 50.9
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 4.9e-30 136.3 161 46.6
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.8e-24 117.9 203 37.4
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 3.1e-24 117.1 162 42.6
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.2e-24 116.3 203 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 5.6e-18 96.3 168 32.7
Ah.10g037740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 3.1e-16 90.5 77 58.4
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.5e-15 88.2 96 45.8
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.5e-15 88.2 96 45.8
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 3.4e-15 87.0 71 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.4e-13 81.6 160 40.6
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 5.4e-13 79.7 84 51.2
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.6e-09 68.2 86 38.4
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.4e-08 64.3 67 46.3
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 6.4e-06 56.2 431 23.7


User provided reference genes

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