Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 3184.8 1744 100.0
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 2817.3 1746 90.4
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1827.4 1758 63.4
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 0.0e+00 1571.6 1476 65.0
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1483.8 1801 53.1
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1466.1 1781 54.1
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1452.6 1780 54.0
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1426.0 1689 53.0
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1425.2 1787 53.5
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1419.8 1776 52.9
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1414.8 1796 52.4
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1411.0 1786 52.7
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1407.9 1779 52.8
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1407.9 1799 51.3
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1374.8 1781 52.0
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1366.3 1742 53.5
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1357.0 1771 50.3
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1341.6 1802 48.9
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1333.2 1835 50.0
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1325.8 1352 60.7
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1318.1 1784 51.7
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1309.7 1739 51.4
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1306.6 1800 49.6
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1306.2 1783 51.5
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1305.4 1722 50.6
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 1302.0 1782 51.0
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1299.6 1760 50.2
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 1299.3 1775 49.5
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 1298.9 1765 49.9
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1297.3 1387 58.9
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1296.6 1776 50.2
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1295.4 1720 51.3
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1293.5 1716 51.1
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 1288.1 1734 50.7
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 1287.7 1727 51.3
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 1286.6 1785 50.2
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1286.2 1793 50.3
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1285.4 1740 51.1
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 1285.0 1748 49.9
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1284.2 1792 50.1
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1283.5 1773 49.9
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1282.3 1790 50.6
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1279.6 1798 49.9
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1277.3 1748 50.8
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1273.1 1748 50.6
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1272.3 1748 50.7
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 1265.8 1766 51.6
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1262.7 1791 49.1
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1260.7 1769 49.0
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 1256.1 1717 50.9
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 1254.2 1731 50.3
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1246.1 1976 46.2
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1236.1 1763 46.6
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1229.2 1889 47.9
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1211.4 1760 49.1
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1204.5 1471 55.6
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1200.3 1570 53.0
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1198.3 1881 47.7
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1191.0 1814 47.8
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1190.3 1755 46.7
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1179.5 1672 49.6
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1178.7 1522 51.0
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1174.1 1197 61.3
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1168.7 1714 48.2
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1164.8 1749 46.3
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1127.5 1467 52.0
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1120.1 1243 58.7
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1115.9 1243 58.4
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1100.5 1254 57.1
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1095.9 1526 50.3
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1083.9 1388 51.4
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 2.0e-309 1066.6 1309 56.4
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 4.1e-302 1042.3 954 62.8
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 2.8e-295 1019.6 1246 54.6
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 2.7e-282 976.5 1278 50.4
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 2.8e-279 966.5 1255 51.9
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 3.5e-277 959.5 1286 52.3
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.5e-267 927.5 952 58.5
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 4.4e-264 916.0 1019 60.5
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 1.5e-256 891.0 823 62.0
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 4.0e-233 813.1 1089 48.5
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 3.4e-232 810.1 1546 42.4
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 9.9e-224 781.9 1301 45.6
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 6.3e-170 603.2 689 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 9.4e-158 562.8 891 42.8
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 5.6e-134 483.8 551 54.8
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.8e-125 454.9 1172 34.2
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.1e-121 441.0 587 49.2
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 6.4e-114 417.2 259 83.0
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 2.4e-113 415.2 786 40.1
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.7e-104 385.2 786 38.7
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.5e-66 257.7 716 32.3
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 2.6e-62 245.7 752 33.9
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 1.5e-59 236.5 232 54.3
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 7.7e-51 207.6 215 52.6
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 2.1e-48 199.5 209 51.7
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 1.3e-45 190.3 533 30.8
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 6.3e-37 161.4 170 52.9
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 2.4e-36 159.5 177 51.4
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.0e-35 156.4 166 55.4
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 1.2e-32 147.1 114 66.7
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-31 142.1 244 37.3
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 4.4e-30 138.7 1367 21.9
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 8.0e-24 117.9 228 32.9
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 3.0e-23 115.9 134 50.7
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 4.0e-23 115.5 131 57.3
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-23 115.5 110 56.4
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.3e-21 110.5 299 30.8
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 1.7e-18 100.1 306 26.1
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 2.1e-16 93.2 150 40.7
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.3e-15 89.7 149 38.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.3e-13 84.0 83 55.4
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 2.2e-13 83.2 71 57.7
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-11 75.9 75 44.0
Actinidia09210 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.6e-06 59.7 216 30.1


User provided reference genes

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