Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008306 Chenopodium quinoa HOM05D006217 ORTHO05D008480 7.3e-236 821.2 870 100.0
AUR62021789 Chenopodium quinoa HOM05D006217 ORTHO05D008480 2.5e-228 796.2 870 98.4
EL10Ac5g10869 Beta vulgaris HOM05D006217 ORTHO05D008480 5.7e-172 609.0 870 88.3
Hund02699 Selenicereus undatus HOM05D006217 ORTHO05D008480 1.9e-146 524.2 872 79.5
Sc12g0005700 Simmondsia chinensis HOM05D006217 ORTHO05D008480 1.9e-146 524.2 871 78.2
Hma1.2p1_0572F.1_g181090 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 9.2e-138 495.4 838 83.5
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 3.5e-137 493.4 867 76.9
Manes.06G099200 Manihot esculenta HOM05D006217 ORTHO05D008480 5.2e-133 479.6 818 84.1
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 1.3e-131 474.9 868 74.7
MD14G1189200 Malus domestica HOM05D006217 ORTHO05D008480 2.9e-131 473.8 820 82.2
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 4.9e-131 473.0 867 75.0
MD06G1183200 Malus domestica HOM05D006217 ORTHO05D008480 1.9e-130 471.1 822 79.2
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 2.4e-130 470.7 870 76.3
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 4.6e-129 466.5 784 85.5
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 1.3e-128 464.9 872 74.8
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 1.3e-128 464.9 797 80.6
Sopen03g032670 Solanum pennellii HOM05D006217 ORTHO05D008480 1.9e-127 461.1 847 80.2
PGSC0003DMG400024573 Solanum tuberosum HOM05D006217 ORTHO05D008480 2.5e-127 460.7 847 80.2
MSTRG.23079 Avicennia marina HOM05D006217 ORTHO05D008480 4.3e-127 459.9 814 82.9
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 2.1e-126 457.6 837 81.7
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 6.2e-126 456.1 866 75.1
CsaV3_1G008120 Cucumis sativus L. HOM05D006217 ORTHO05D008480 1.8e-125 454.5 863 79.3
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 3.1e-125 453.8 874 74.3
Solyc03g113630.3 Solanum lycopersicum HOM05D006217 ORTHO05D008480 2.0e-124 451.1 847 79.8
CAN.G853.39 Capsicum annuum HOM05D006217 ORTHO05D008480 4.4e-124 449.9 847 79.3
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 4.4e-124 449.9 870 74.3
MELO3C002229.2 Cucumis melo HOM05D006217 ORTHO05D008480 5.8e-124 449.5 862 74.7
Peaxi162Scf00017g02228 Petunia axillaris HOM05D006217 ORTHO05D008480 9.9e-124 448.7 847 80.5
arahy.Tifrunner.gnm1.ann1.KCM1HB Arachis hypogaea HOM05D006217 ORTHO05D008480 8.4e-123 445.7 819 82.3
arahy.Tifrunner.gnm1.ann1.C8Z94U Arachis hypogaea HOM05D006217 ORTHO05D008480 1.1e-122 445.3 819 82.2
Lj4g0005624 Lotus japonicus HOM05D006217 ORTHO05D008480 2.4e-122 444.1 852 80.0
CANSAT80G1888 Cannabis sativa HOM05D006217 ORTHO05D008480 3.2e-122 443.7 861 80.0
TPR.G38418 Trifolium pratense HOM05D006217 ORTHO05D008480 9.3e-122 442.2 859 78.5
Dinv13121 Davidia involucrata HOM05D006217 ORTHO05D008480 1.7e-120 438.0 870 79.2
Gorai.008G298300 Gossypium raimondii HOM05D006217 ORTHO05D008480 2.3e-120 437.6 793 84.5
Ca_21873_v3 Cicer arietinum L. HOM05D006217 ORTHO05D008480 3.9e-120 436.8 871 77.5
Migut.I00075 Erythranthe guttata HOM05D006217 ORTHO05D008480 3.9e-120 436.8 816 82.2
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 2.5e-119 434.1 874 79.1
Sabra15G0093400 Salix brachista HOM05D006217 ORTHO05D008480 4.3e-119 433.3 872 78.6
Ah.11g046350 Amaranthus hybridus HOM05D006217 ORTHO05D008480 5.6e-119 433.0 720 87.6
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 1.3e-118 431.8 873 73.7
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 2.4e-117 427.6 772 74.0
CiPaw.11G034100 Carya illinoinensis HOM05D006217 ORTHO05D008480 5.3e-117 426.4 846 80.5
Gohir.A12G276600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 5.3e-117 426.4 779 85.4
Gohir.D12G277600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 6.9e-117 426.0 779 85.2
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 9.0e-117 425.6 865 73.3
Medtr4g107210 Medicago truncatula HOM05D006217 ORTHO05D008480 1.7e-115 421.4 870 77.5
Lj9C455T7 Lonicera japonica HOM05D006217 ORTHO05D008480 2.9e-115 420.6 926 68.5
QL10p013967 Quercus lobata HOM05D006217 ORTHO05D008480 3.8e-115 420.2 871 78.5
vmacro19344 Vaccinium macrocarpon HOM05D006217 ORTHO05D008480 2.4e-114 417.5 943 62.8
TAR622G0668 Trochodendron aralioides HOM05D006217 ORTHO05D008480 7.1e-114 416.0 832 80.4
Potri.015G069100 Populus trichocarpa HOM05D006217 ORTHO05D008480 9.3e-114 415.6 873 77.9
Phvul.003G195800 Phaseolus vulgaris HOM05D006217 ORTHO05D008480 7.9e-113 412.5 816 80.9
Cpa.g.sc35.13 Carica papaya HOM05D006217 ORTHO05D008480 1.8e-112 411.4 860 78.1
SalBow5G1548 Salvia bowleyana HOM05D006217 ORTHO05D008480 2.3e-112 411.0 871 78.0
Rhsim08G0164000 Rhododendron simsii HOM05D006217 ORTHO05D008480 8.7e-112 409.1 884 75.5
Duzib205G0682 Durio zibethinus HOM05D006217 ORTHO05D008480 1.5e-111 408.3 816 81.4
ClCG01G014190 Citrullus lanatus HOM05D006217 ORTHO05D008480 1.9e-111 407.9 863 77.8
TWI15G0191 Tripterygium wilfordii HOM05D006217 ORTHO05D008480 2.5e-111 407.5 865 78.4
ECA232G4291 Erigeron canadensis HOM05D006217 ORTHO05D008480 9.6e-111 405.6 809 80.8
Haze_07417 Corylus avellana HOM05D006217 ORTHO05D008480 2.1e-110 404.4 872 78.1
COL.COLO4_26823 Corchorus olitorius HOM05D006217 ORTHO05D008480 2.8e-110 404.1 816 80.5
Glyma.05G032300 Glycine max HOM05D006217 ORTHO05D008480 4.8e-110 403.3 866 77.9
BcaC08g46912 Brassica carinata HOM05D006217 ORTHO05D008480 1.3e-107 395.2 843 65.6
Actinidia04949 Actinidia chinensis HOM05D006217 ORTHO05D008480 8.4e-107 392.5 861 72.0
SGA_v2.0_scaffold56G20089 Striga asiatica HOM05D006217 ORTHO05D008480 4.2e-106 390.2 861 76.3
Glyma.17G094300 Glycine max HOM05D006217 ORTHO05D008480 1.6e-105 388.3 872 76.8
THA.LOC104809230 Tarenaya hassleriana HOM05D006217 ORTHO05D008480 1.6e-105 388.3 827 79.6
Carub.0002s2163 Capsella rubella HOM05D006217 ORTHO05D008480 2.7e-105 387.5 818 80.4
AT1G74850 Arabidopsis thaliana HOM05D006217 ORTHO05D008480 1.8e-104 384.8 827 80.3
AL2G34730 Arabidopsis lyrata HOM05D006217 ORTHO05D008480 1.1e-103 382.1 827 79.8
A07p40490 Brassica napus HOM05D006217 ORTHO05D008480 7.4e-103 379.4 832 78.8
C06p48860 Brassica napus HOM05D006217 ORTHO05D008480 1.3e-102 378.6 832 78.8
BolC6t39922H Brassica oleracea HOM05D006217 ORTHO05D008480 1.3e-102 378.6 832 78.8
BraA07t31592Z Brassica rapa HOM05D006217 ORTHO05D008480 1.3e-102 378.6 832 78.8
Thhalv10018112m.g Eutrema salsugineum HOM05D006217 ORTHO05D008480 1.3e-102 378.6 824 79.9
HanXRQChr16g0503451 Helianthus annuus HOM05D006217 ORTHO05D008480 1.6e-102 378.3 833 77.7
Aa31LG4G5060 Aethionema arabicum HOM05D006217 ORTHO05D008480 3.7e-102 377.1 798 81.5
BcaC08g46950 Brassica carinata HOM05D006217 ORTHO05D008480 1.8e-101 374.8 841 78.1
Lsat_1_v5_gn_4_74540 Lactuca sativa HOM05D006217 ORTHO05D008480 2.6e-100 370.9 809 79.0
Sp5g29980 Schrenkiella parvula HOM05D006217 ORTHO05D008480 5.8e-100 369.8 815 79.4
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 1.1e-98 365.5 818 74.9
PSO591G0410 Papaver somniferum HOM05D006217 ORTHO05D008480 3.5e-97 360.5 875 74.3
GSVIVG01007844001 Vitis vinifera HOM05D006217 ORTHO05D008480 3.5e-97 360.5 276 64.5
PSO832G0921 Papaver somniferum HOM05D006217 ORTHO05D008480 6.0e-97 359.8 876 74.3
Cc04_g16120 Coffea canephora HOM05D006217 ORTHO05D008480 1.0e-96 359.0 276 64.1
ATR0681G229 Amborella trichopoda HOM05D006217 ORTHO05D008480 3.7e-94 350.5 815 73.3
CDE10G0083 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 7.2e-90 336.3 805 74.7
CDE10G0055 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.8e-88 331.6 783 76.0
HPP92_019917 Vanilla planifolia HOM05D006217 ORTHO05D008480 5.7e-87 326.6 770 78.7
BcaC08g46908 Brassica carinata HOM05D006217 ORTHO05D008480 5.3e-85 320.1 843 65.5
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 2.1e-73 281.6 801 55.3
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 6.1e-73 280.0 807 69.4
Sed0019903 Sechium edule HOM05D006217 ORTHO05D008480 6.7e-72 276.6 725 82.6
VMungo1215G1148 Vigna mungo HOM05D006217 ORTHO05D008480 2.0e-71 275.0 245 56.3
CARHR068160 Cardamine hirsuta HOM05D006217 ORTHO05D008480 1.3e-70 272.3 234 60.7
unitig_750.g28482 Utricularia gibba HOM05D006217 ORTHO05D008480 4.1e-69 267.3 196 65.3
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 9.1e-69 266.2 267 49.8
FAN08G1390 Fragaria x ananassa HOM05D006217 ORTHO05D008480 6.5e-67 260.0 872 66.3
Hma1.2p1_0572F.1_g181080 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 1.2e-65 255.8 283 74.2
FAN18G2370 Fragaria x ananassa HOM05D006217 ORTHO05D008480 1.4e-64 252.3 870 67.0
FAN13G2523 Fragaria x ananassa HOM05D006217 ORTHO05D008480 4.0e-64 250.8 880 65.7
FAN04G0516 Fragaria x ananassa HOM05D006217 ORTHO05D008480 6.7e-64 250.0 878 65.5
CARHR068170 Cardamine hirsuta HOM05D006217 ORTHO05D008480 6.3e-62 243.4 232 84.5
Thecc.03G001400 Theobroma cacao HOM05D006217 ORTHO05D008480 9.1e-61 239.6 221 86.9
VMungo1215G2521 Vigna mungo HOM05D006217 ORTHO05D008480 2.5e-58 231.5 269 75.1
unitig_750.g28484 Utricularia gibba HOM05D006217 ORTHO05D008480 2.3e-56 224.9 127 79.5
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 8.3e-54 216.5 792 71.7
SEGI_32227 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 1.7e-51 208.8 228 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2637 Anthoceros agrestis HOM05D006217 ORTHO05D008480 1.1e-50 206.1 777 72.5
SMO353G0114 Selaginella moellendorffii HOM05D006217 ORTHO05D008480 3.6e-49 201.1 773 66.8
Pp3c11_11830 Physcomitrium patens HOM05D006217 ORTHO05D008480 6.3e-46 190.3 781 71.3
ECA232G0106 Erigeron canadensis HOM05D006217 ORTHO05D008480 1.3e-43 182.6 229 44.5
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 2.6e-39 168.3 110 65.5
AUR62021792 Chenopodium quinoa HOM05D006217 ORTHO05D008480 6.6e-27 127.1 142 99.3
Lsat_1_v5_gn_3_59501 Lactuca sativa HOM05D001195 ORTHO05D001138 1.6e-12 79.3 48 66.7
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 1.0e-11 76.6 144 29.2
FvH4_5g08849 Fragaria vesca HOM05D006217 ORTHO05D008480 3.9e-11 74.7 56 57.1
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.1e-10 73.2 237 24.9
Dinv02652 Davidia involucrata HOM05D006217 ORTHO05D008480 8.1e-09 67.0 69 53.6
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.4e-08 66.2 223 26.0
CBR_g10873 Chara braunii HOM05D006217 ORTHO05D023528 1.8e-08 65.9 94 33.0
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 3.1e-08 65.1 219 26.0
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 6.9e-08 63.9 219 26.0
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 9.0e-08 63.5 97 32.0
Sed0017741 Sechium edule HOM05D006217 ORTHO05D011532 9.0e-08 63.5 274 24.1
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 1.2e-07 63.2 219 25.6
CBR_g31210 Chara braunii HOM05D004127 ORTHO05D005119 2.0e-07 62.4 170 25.3
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.6e-07 62.0 219 25.6
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 2.6e-07 62.0 219 25.6
AagrBONN_evm.TU.Sc2ySwM_117.1008 Anthoceros agrestis HOM05D006414 ORTHO05D007780 3.4e-07 61.6 81 37.0
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 4.4e-07 61.2 219 25.6
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 5.8e-07 60.8 219 25.1
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 5.8e-07 60.8 219 25.1
Medtr7g017525 Medicago truncatula HOM05D004127 ORTHO05D005119 7.6e-07 60.5 216 23.6
Medtr7g017530 Medicago truncatula HOM05D004127 ORTHO05D005119 7.6e-07 60.5 216 23.6
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 9.9e-07 60.1 218 22.5
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 9.9e-07 60.1 207 22.7
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 9.9e-07 60.1 218 22.5
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 9.9e-07 60.1 218 22.5
GSVIVG01028141001 Vitis vinifera HOM05D004127 ORTHO05D005119 9.9e-07 60.1 251 24.3
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 1.7e-06 59.3 219 25.6
AagrBONN_evm.TU.Sc2ySwM_117.1400 Anthoceros agrestis HOM05D006217 ORTHO05D023528 1.7e-06 59.3 220 23.2
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 1.7e-06 59.3 219 25.6
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 1.7e-06 59.3 219 24.7
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 2.2e-06 58.9 219 25.6
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 2.9e-06 58.5 219 24.7
Gohir.D11G112800 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.9e-06 58.5 219 24.7
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 3.8e-06 58.2 219 24.2
arahy.Tifrunner.gnm1.ann1.1I1C4M Arachis hypogaea HOM05D004127 ORTHO05D005119 4.9e-06 57.8 167 25.1
Gohir.A11G108300 Gossypium hirsutum HOM05D004127 ORTHO05D005119 4.9e-06 57.8 219 25.1
Gorai.007G121300 Gossypium raimondii HOM05D004127 ORTHO05D005119 4.9e-06 57.8 219 25.1
CBR_g41643 Chara braunii HOM05D005862 ORTHO05D007731 6.4e-06 57.4 128 30.5
TWI75G0020 Tripterygium wilfordii HOM05D004127 ORTHO05D005119 6.4e-06 57.4 219 24.7
Eucgr.H00998 Eucalyptus grandis HOM05D004127 ORTHO05D005119 8.4e-06 57.0 219 24.2


User provided reference genes

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