Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 8.4e-111 403.7 200 100.0
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.8e-105 386.0 200 95.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 4.2e-86 321.6 200 79.5
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.7e-85 318.9 199 77.4
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.3e-68 262.7 199 65.8
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 3.0e-68 262.3 199 63.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.3e-67 258.8 201 64.7
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 6.3e-66 254.6 200 61.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.1e-65 253.8 200 59.0
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.4e-65 252.7 200 59.5
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 5.3e-65 251.5 200 61.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.3e-65 251.5 200 61.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.6e-64 250.0 193 62.7
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 2.6e-64 249.2 200 61.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 3.5e-64 248.8 193 60.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 7.7e-64 247.7 199 61.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.8e-63 245.4 200 61.5
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 5.0e-63 245.0 199 58.3
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.0e-63 245.0 200 60.5
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.0e-63 245.0 199 56.8
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.2e-62 242.3 199 56.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.2e-62 242.3 199 57.3
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.6e-61 240.0 200 57.5
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.1e-61 239.6 200 56.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.6e-61 238.8 190 59.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 4.7e-61 238.4 201 57.2
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 8.0e-61 237.7 193 58.5
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 8.0e-61 237.7 200 58.5
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.0e-60 237.3 194 58.8
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.4e-60 236.9 199 57.3
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 3.0e-60 235.7 200 59.0
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 3.0e-60 235.7 195 57.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.0e-60 235.3 190 58.9
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.2e-60 235.0 187 61.5
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 5.2e-60 235.0 199 57.3
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 8.8e-60 234.2 194 55.7
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 8.8e-60 234.2 194 59.3
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 8.8e-60 234.2 247 48.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 8.8e-60 234.2 195 56.4
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.5e-59 233.4 191 58.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.6e-59 232.6 190 57.9
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 3.3e-59 232.3 194 55.2
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.3e-59 232.3 198 56.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 4.4e-59 231.9 194 56.7
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.7e-58 229.9 194 57.2
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.2e-58 229.6 198 55.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.2e-58 229.6 194 57.7
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.8e-58 229.2 196 56.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.1e-57 227.3 198 57.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.1e-57 227.3 196 56.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.8e-57 226.5 190 54.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 5.3e-57 224.9 200 57.0
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.7e-56 222.6 195 56.9
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 5.9e-56 221.5 195 53.3
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 5.9e-56 221.5 196 52.6
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-55 220.7 200 56.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.3e-55 220.3 194 55.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 1.3e-55 220.3 195 54.9
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.3e-55 220.3 199 54.8
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.9e-55 219.2 195 53.3
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.9e-55 219.2 187 54.5
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.8e-55 218.8 183 55.2
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 8.5e-55 217.6 200 53.5
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 8.5e-55 217.6 195 52.3
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.1e-54 217.2 200 53.5
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.1e-54 217.2 196 54.6
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.1e-54 217.2 199 54.3
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 2.5e-54 216.1 188 52.1
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 4.2e-54 215.3 197 55.8
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 7.2e-54 214.5 194 52.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 9.4e-54 214.2 189 55.0
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-53 213.8 200 54.5
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.2e-53 213.8 198 53.0
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.6e-53 213.4 198 52.5
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-53 213.4 194 53.6
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.1e-53 213.0 194 54.6
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.7e-53 211.8 185 53.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.1e-53 211.5 200 54.0
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 6.1e-53 211.5 194 53.6
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.1e-53 211.5 196 54.1
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.1e-53 211.5 190 51.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.1e-53 211.5 192 50.5
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 8.0e-53 211.1 194 52.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.4e-52 210.3 194 54.1
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.8e-52 209.9 195 51.8
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.3e-52 209.5 194 50.5
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.0e-52 209.1 198 54.0
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 3.0e-52 209.1 192 53.1
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.0e-52 209.1 193 54.4
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.0e-52 208.8 192 53.6
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 6.8e-52 208.0 198 51.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 8.8e-52 207.6 186 53.2
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.3e-50 203.8 200 54.0
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.3e-50 203.8 194 51.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 2.8e-50 202.6 194 49.5
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.7e-50 202.2 190 47.9
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.8e-50 201.8 190 53.2
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 6.3e-50 201.4 189 50.8
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.1e-49 200.7 192 50.5
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.1e-49 200.7 190 47.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.1e-49 200.7 190 53.2
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 191 48.2
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.4e-49 199.5 191 48.2
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.4e-49 199.5 189 52.9
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 5.4e-49 198.4 196 52.0
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.2e-48 197.2 194 48.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.6e-48 196.8 193 51.8
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-48 196.8 196 52.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-48 196.1 196 51.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-48 196.1 196 52.6
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.5e-48 195.7 194 48.5
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.5e-48 195.3 198 52.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 7.7e-48 194.5 194 46.9
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.0e-47 194.1 178 55.1
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.3e-47 193.0 190 47.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.9e-47 192.6 196 49.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 6.5e-47 191.4 196 52.6
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 6.5e-47 191.4 174 52.3
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 8.6e-47 191.0 196 50.5
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-46 190.7 193 50.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.1e-46 190.7 178 54.5
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 3.3e-46 189.1 195 50.3
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.3e-46 189.1 192 47.9
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 7.2e-46 188.0 199 50.8
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 7.2e-46 188.0 199 46.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-45 186.8 194 47.4
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.1e-45 186.4 144 59.7
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.1e-45 186.4 192 47.9
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.0e-45 184.5 192 47.4
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.0e-44 184.1 149 58.4
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.4e-44 183.7 193 46.6
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.4e-44 183.7 193 48.7
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 8.9e-44 181.0 181 49.7
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.5e-43 180.3 145 57.9
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.0e-43 179.9 191 46.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.0e-43 179.9 186 46.8
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 7.5e-43 177.9 194 45.4
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.5e-43 177.9 173 52.0
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.3e-42 177.2 190 44.2
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.2e-42 176.4 190 48.4
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.7e-42 175.6 196 45.4
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-41 173.7 171 49.1
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.7e-40 169.5 165 50.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.9e-40 168.3 198 44.9
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.9e-40 168.3 198 44.9
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.9e-40 168.3 191 42.9
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-39 167.5 192 44.3
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.5e-38 163.7 191 43.5
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 4.3e-38 162.2 191 43.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.6e-38 161.8 125 61.6
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.7e-37 158.7 158 50.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.3e-36 156.4 199 46.2
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 5.2e-36 155.2 165 47.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.2e-35 154.1 189 42.3
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.4e-35 152.5 145 51.7
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.3e-34 150.6 197 42.1
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.7e-34 149.1 145 49.0
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.9e-34 148.7 161 47.2
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.8e-33 146.7 200 43.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-32 143.7 134 53.0
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 7.8e-32 141.4 126 54.0
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.9e-28 127.9 152 44.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 7.0e-25 118.2 114 49.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.0e-23 114.4 200 37.5
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.3e-18 97.4 193 31.1
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 2.2e-18 96.7 108 48.1
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 7.8e-16 88.2 85 51.8
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.0e-15 87.8 105 43.8
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 8.6e-15 84.7 221 26.7
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.9e-14 83.6 185 33.5
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 3.3e-14 82.8 200 28.5
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 3.6e-13 79.3 84 45.2
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 8.4e-10 68.2 78 41.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.4e-09 66.6 75 41.3
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.6e-08 62.4 95 41.1
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.3e-07 60.8 83 43.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.9e-06 57.0 159 28.3
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.9e-06 57.0 161 31.7


User provided reference genes

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