Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1308.5 669 100.0
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1271.5 701 93.9
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1132.1 709 83.1
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1121.3 714 81.7
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 7.2e-308 1060.1 699 77.8
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 6.5e-301 1036.9 694 78.1
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 1.0e-298 1029.6 702 76.9
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 2.6e-297 1025.0 700 76.7
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 3.4e-297 1024.6 701 76.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.1e-295 1019.6 700 76.6
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.8e-295 1018.8 699 75.4
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 3.5e-294 1014.6 704 75.6
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.0e-293 1013.1 700 75.1
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 2.3e-293 1011.9 711 74.5
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 2.9e-293 1011.5 692 75.1
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 2.9e-293 1011.5 708 74.0
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.8e-293 1011.1 700 74.7
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 9.5e-292 1006.5 710 74.2
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 1.6e-291 1005.7 711 74.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.6e-291 1004.6 711 74.0
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 4.7e-291 1004.2 706 74.4
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 4.0e-290 1001.1 698 75.1
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 5.2e-290 1000.7 700 75.6
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 1.2e-289 999.6 695 75.5
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 1.5e-289 999.2 697 74.3
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.0e-289 998.8 711 73.8
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 3.4e-289 998.0 709 74.0
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 4.4e-289 997.7 707 73.6
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 5.7e-289 997.3 711 73.7
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 7.5e-289 996.9 702 73.5
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 1.3e-288 996.1 704 74.6
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 1.7e-288 995.7 696 74.1
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.7e-288 995.7 711 73.3
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.2e-288 995.3 694 74.9
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 3.7e-288 994.6 709 73.1
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 3.7e-288 994.6 690 74.1
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 5.4e-287 990.7 699 73.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.0e-286 988.8 700 73.1
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 4.6e-286 987.6 718 72.3
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 7.8e-286 986.9 700 73.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 7.8e-286 986.9 694 75.4
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 7.8e-286 986.9 698 74.4
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 7.8e-286 986.9 699 73.7
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.3e-285 986.1 698 74.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 1.7e-285 985.7 699 73.7
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 5.0e-285 984.2 698 74.1
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 2.5e-284 981.9 708 72.5
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 3.3e-284 981.5 697 73.7
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.3e-284 981.5 698 74.4
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 5.6e-284 980.7 695 73.5
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 5.6e-284 980.7 703 73.4
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 8.0e-283 976.9 696 73.1
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.0e-282 976.5 692 74.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 5.2e-282 974.2 708 72.2
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 5.2e-282 974.2 685 73.4
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 3.4e-281 971.5 710 72.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.9e-280 968.4 708 71.9
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 8.3e-280 966.8 705 72.1
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 8.3e-280 966.8 678 74.5
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 8.3e-280 966.8 678 74.5
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 8.3e-280 966.8 701 72.6
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 4.1e-279 964.5 681 74.3
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 5.4e-279 964.1 708 71.8
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 9.2e-279 963.4 709 71.4
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.6e-278 962.6 680 73.8
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.7e-278 961.8 709 71.5
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 4.6e-278 961.1 688 72.5
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.0e-277 959.9 708 71.5
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 1.3e-277 959.5 699 72.8
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 2.3e-277 958.7 699 73.0
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 2.3e-277 958.7 680 73.8
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 5.0e-277 957.6 707 71.6
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 8.6e-277 956.8 696 72.4
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 2.5e-276 955.3 699 71.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 5.6e-276 954.1 710 71.1
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 9.5e-276 953.4 697 72.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.2e-275 953.0 697 71.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.3e-274 948.7 738 68.7
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 3.1e-274 948.3 744 68.0
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 9.8e-273 943.3 694 69.9
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 3.7e-272 941.4 692 71.4
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 6.0e-270 934.1 692 71.1
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 2.3e-269 932.2 695 71.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 8.6e-269 930.2 648 74.7
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.9e-268 929.1 696 70.5
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.8e-266 922.5 763 65.4
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 3.7e-264 914.8 650 72.9
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.4e-263 912.9 680 71.6
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.0e-261 905.2 643 74.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.9e-256 888.6 703 66.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 3.8e-256 888.3 697 67.4
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.1e-254 882.5 669 67.7
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 6.6e-253 877.5 698 66.6
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 9.6e-252 873.6 644 72.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.8e-250 869.4 688 69.2
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 4.9e-248 861.3 655 70.2
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.8e-226 789.6 540 73.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.7e-224 783.1 540 72.2
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 6.9e-218 761.1 706 57.9
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 7.2e-215 751.1 691 58.5
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 3.9e-213 745.3 717 55.4
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 9.7e-212 740.7 692 55.1
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.9e-208 729.2 699 53.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.2e-203 713.0 546 72.0
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.3e-203 711.4 543 62.6
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.1e-194 684.1 533 61.5
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.3e-192 677.2 531 62.5
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.9e-177 625.2 414 74.6
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.3e-175 619.4 520 58.5
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 4.7e-166 589.0 403 74.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-149 534.3 414 61.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.2e-140 504.6 343 74.3
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.3e-128 463.8 269 83.3
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 3.7e-86 323.6 493 39.1
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 9.1e-85 318.9 681 33.9
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 3.8e-83 313.5 278 59.4
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.5e-83 312.8 254 60.6
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.4e-77 294.3 622 38.7
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.8e-72 278.1 263 61.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.2e-62 244.6 351 44.7
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.7e-62 243.8 584 31.3
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 7.5e-39 166.4 99 77.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 7.1e-37 159.8 83 88.0
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 5.1e-27 127.1 97 69.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.3e-26 124.4 127 55.1
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.1e-21 109.4 117 54.7
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.1e-21 109.4 54 88.9
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 9.9e-15 86.3 103 45.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.8e-11 75.5 138 37.0
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.5e-10 71.6 77 51.9
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 8.1e-09 66.6 41 75.6
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 3.1e-08 64.7 75 48.0
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 6.4e-06 57.0 93 41.9


User provided reference genes

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