Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007656 Chenopodium quinoa HOM05D002653 ORTHO05D002623 0.0e+00 1407.1 722 100.0
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 0.0e+00 1305.4 722 93.9
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 5.8e-303 1043.9 753 75.3
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 9.4e-237 823.9 718 62.0
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 2.2e-233 812.8 727 59.6
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.6e-228 796.6 724 57.9
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 2.0e-226 789.6 722 57.2
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 4.8e-225 785.0 728 57.7
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 4.1e-224 781.9 732 57.8
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 1.2e-218 763.8 743 56.0
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 2.4e-216 756.1 728 56.7
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 2.8e-212 742.7 720 56.0
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 1.8e-211 740.0 722 55.0
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 1.3e-209 733.8 723 54.2
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 1.7e-209 733.4 719 55.9
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 2.4e-208 729.6 718 54.0
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 7.0e-208 728.0 718 55.6
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.7e-207 726.1 719 55.6
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 4.5e-207 725.3 725 54.3
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 5.9e-207 724.9 725 53.5
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 1.7e-206 723.4 719 55.6
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 1.7e-206 723.4 726 54.1
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.3e-206 723.0 719 55.6
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.9e-205 719.9 718 54.6
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 9.5e-205 717.6 718 54.6
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 2.3e-203 713.0 726 54.4
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 3.7e-201 705.7 724 53.3
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 8.3e-201 704.5 721 53.3
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.4e-200 703.7 717 53.3
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 2.4e-200 703.0 716 54.9
Peaxi162Scf00126g00524 Petunia axillaris HOM05D002653 ORTHO05D002623 5.4e-200 701.8 724 53.7
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 5.4e-200 701.8 725 53.5
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 1.2e-199 700.7 867 46.6
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.2e-199 700.7 724 53.5
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 5.0e-198 695.3 725 54.1
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 5.0e-198 695.3 726 52.9
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 1.5e-197 693.7 723 53.0
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 7.3e-197 691.4 732 52.3
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 3.6e-196 689.1 723 52.8
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 6.2e-196 688.3 724 53.6
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 6.2e-196 688.3 722 52.8
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 3.1e-195 686.0 723 52.4
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 3.1e-195 686.0 723 52.3
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 4.0e-195 685.6 724 53.6
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.0e-195 685.6 724 53.6
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.0e-195 685.6 724 53.6
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.3e-193 680.6 716 53.6
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 1.7e-193 680.2 723 52.0
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 2.2e-193 679.9 729 52.0
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 2.9e-193 679.5 716 51.8
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 4.1e-192 675.6 726 52.2
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 5.4e-192 675.2 724 51.9
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.2e-191 674.1 724 51.8
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 3.5e-191 672.5 720 50.8
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 8.6e-190 667.9 724 51.8
VMungo0251G2737 Vigna mungo HOM05D002653 ORTHO05D002623 7.3e-189 664.8 720 50.8
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 9.5e-189 664.5 731 51.2
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 2.1e-188 663.3 722 51.7
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 8.3e-185 651.4 720 50.4
Phvul.002G328704 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 8.3e-185 651.4 720 50.4
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.9e-184 650.2 720 50.4
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 4.1e-184 649.0 727 50.1
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 9.2e-184 647.9 723 50.2
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 1.6e-183 647.1 722 50.7
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 1.6e-183 647.1 731 50.1
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 2.1e-183 646.7 737 50.6
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 3.5e-183 646.0 718 50.4
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 3.5e-183 646.0 722 50.8
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 1.0e-182 644.4 718 50.3
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 1.0e-182 644.4 718 50.3
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 1.6e-180 637.1 722 50.1
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 2.1e-180 636.7 722 49.6
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 4.7e-180 635.6 747 48.6
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 6.2e-180 635.2 722 49.4
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 8.1e-180 634.8 729 49.9
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 3.1e-179 632.9 729 49.8
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 4.0e-179 632.5 722 50.7
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 5.2e-179 632.1 723 49.2
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 2.6e-178 629.8 736 49.2
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 5.8e-178 628.6 721 48.8
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 7.1e-176 621.7 722 48.6
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 3.9e-174 615.9 702 49.4
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 4.0e-163 579.3 725 46.5
CSS0047039 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.9e-161 572.4 474 62.0
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 5.1e-158 562.4 719 45.9
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 5.3e-155 552.4 721 43.3
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 6.4e-153 545.4 492 59.1
MD09G1170300 Malus domestica HOM05D002653 ORTHO05D002623 3.9e-142 509.6 652 46.2
COL.COLO4_33575 Corchorus olitorius HOM05D002653 ORTHO05D002623 1.8e-134 484.2 386 63.7
MELO3C010025.2 Cucumis melo HOM05D002653 ORTHO05D002623 5.7e-133 479.2 417 61.2
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 6.5e-113 412.5 466 49.4
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 3.2e-104 383.6 436 48.2
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 6.3e-100 369.4 667 36.3
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 1.6e-98 364.8 646 36.7
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 7.2e-96 355.9 394 50.0
Ca_27225_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 5.7e-93 346.3 352 56.0
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 3.5e-90 337.0 578 38.1
Os08g0116566 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 3.9e-89 333.6 363 48.8
Gorai.012G024500 Gossypium raimondii HOM05D002653 ORTHO05D002623 3.6e-87 327.0 342 54.4
Haze_24502 Corylus avellana HOM05D002653 ORTHO05D002623 8.0e-87 325.9 255 63.9
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 3.1e-86 323.9 361 48.8
Ca_01486_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 4.1e-83 313.5 265 63.0
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 2.3e-70 271.2 254 58.3
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 9.2e-67 259.2 359 44.0
HPP92_001361 Vanilla planifolia HOM05D002653 ORTHO05D002623 5.1e-65 253.4 417 39.1
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 3.3e-56 224.2 362 40.1
SEGI_11936 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.2e-53 215.7 366 35.2
Ca_30710_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 4.4e-53 213.8 292 44.9
arahy.Tifrunner.gnm1.ann1.LJ799F Arachis hypogaea HOM05D002653 ORTHO05D002623 5.4e-51 206.8 359 40.7
Hma1.2p1_2738F.1_g327710 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.4e-46 192.2 248 44.4
Aqoxy4G01176 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 3.4e-45 187.6 143 64.3
CBR_g47051 Chara braunii HOM05D002653 ORTHO05D002623 3.4e-45 187.6 958 23.3
Hma1.2p1_2738F.1_g327700 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 9.0e-38 162.9 147 55.1
Haze_24503 Corylus avellana HOM05D002653 ORTHO05D002623 2.1e-34 151.8 107 69.2
HPP92_000045 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.5e-32 145.6 141 53.2
arahy.Tifrunner.gnm1.ann1.FGIJ89 Arachis hypogaea HOM05D002653 ORTHO05D002623 3.4e-29 134.4 264 37.9
Actinidia28837 Actinidia chinensis HOM05D002653 ORTHO05D002623 2.9e-28 131.3 108 62.0
arahy.Tifrunner.gnm1.ann1.U4FA7I Arachis hypogaea HOM05D002653 ORTHO05D002623 1.1e-27 129.4 114 57.0
Actinidia28775 Actinidia chinensis HOM05D002313 ORTHO05D002623 3.0e-25 121.3 106 58.5
Ca_09437_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 7.4e-24 116.7 94 63.8
Cfa027332 Carpinus fangiana HOM05D001092 ORTHO05D000923 1.0e-20 106.3 219 31.5
HPP92_010163 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.3e-20 105.9 115 48.7
SEGI_37137 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.1e-19 102.8 75 65.3
PRCOL_00001171 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 1.2e-18 99.4 247 29.6
arahy.Tifrunner.gnm1.ann1.P3JCM3 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.1e-14 86.3 96 53.1
Actinidia28844 Actinidia chinensis HOM05D002313 ORTHO05D002623 1.9e-11 75.5 68 55.9
arahy.Tifrunner.gnm1.ann1.Y0I0AR Arachis hypogaea HOM05D002653 ORTHO05D002623 7.2e-11 73.6 60 65.0
BcaC07g37172 Brassica carinata HOM05D001092 ORTHO05D000923 7.4e-08 63.5 209 28.2
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 7.4e-08 63.5 127 33.1
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.3e-07 62.8 91 44.0
BcaB04g17465 Brassica carinata HOM05D001092 ORTHO05D000923 1.7e-07 62.4 209 27.8
A08p05240 Brassica napus HOM05D001092 ORTHO05D000923 1.7e-07 62.4 209 27.8
A08p06860 Brassica napus HOM05D001092 ORTHO05D000923 1.7e-07 62.4 209 27.8
C08p05520 Brassica napus HOM05D001092 ORTHO05D000923 1.7e-07 62.4 209 27.8
BolC8t47372H Brassica oleracea HOM05D001092 ORTHO05D000923 1.7e-07 62.4 209 27.8
BraA08t32540Z Brassica rapa HOM05D001092 ORTHO05D000923 1.7e-07 62.4 209 27.8
Carub.0001s3719 Capsella rubella HOM05D001092 ORTHO05D000923 2.2e-07 62.0 209 27.8
AL1G54650 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 2.8e-07 61.6 209 27.8
AT1G48090 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 2.8e-07 61.6 209 27.8
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 2.8e-07 61.6 223 26.9
A06p04720 Brassica napus HOM05D001092 ORTHO05D000923 3.7e-07 61.2 209 27.8
BraA06t23675Z Brassica rapa HOM05D001092 ORTHO05D000923 3.7e-07 61.2 209 27.8
SalBow2G0206 Salvia bowleyana HOM05D007496 ORTHO05D009479 3.7e-07 61.2 98 41.8
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 3.7e-07 61.2 209 27.8
C06p02470 Brassica napus HOM05D001092 ORTHO05D000923 4.8e-07 60.8 209 27.8
BolC6t35374H Brassica oleracea HOM05D001092 ORTHO05D000923 4.8e-07 60.8 209 27.8
Zm00001eb203090 Zea mays HOM05D001092 ORTHO05D000923 4.8e-07 60.8 194 27.3
BraA08t32704Z Brassica rapa HOM05D001092 ORTHO05D000923 6.3e-07 60.5 209 27.3
Thhalv10011170m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 6.3e-07 60.5 208 26.9
Haze_00822 Corylus avellana HOM05D001092 ORTHO05D000923 8.2e-07 60.1 568 21.5
Potri.008G100600 Populus trichocarpa HOM05D001092 ORTHO05D000923 8.2e-07 60.1 210 26.7
Gohir.D02G062000 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.1e-06 59.7 233 27.9
PRCOL_00005014 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 1.1e-06 59.7 358 22.3
Gohir.A10G175801 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.4e-06 59.3 209 26.8
Gohir.D10G182400 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.4e-06 59.3 209 26.8
Gorai.011G204400 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.4e-06 59.3 209 26.8
Sabra08G0076100 Salix brachista HOM05D001092 ORTHO05D000923 1.4e-06 59.3 210 26.7
Os02g0470400 Oryza sativa ssp. japonica HOM05D001092 ORTHO05D000923 1.8e-06 58.9 194 27.3
PRCOL_00006863 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 1.8e-06 58.9 211 30.3
Actinidia18490 Actinidia chinensis HOM05D001092 ORTHO05D000923 2.4e-06 58.5 194 26.8
Lj4g0014122 Lotus japonicus HOM05D001092 ORTHO05D000923 2.4e-06 58.5 168 28.0
Sc03g0001750 Simmondsia chinensis HOM05D001092 ORTHO05D000923 2.4e-06 58.5 190 27.4
Aa31LG10G5640 Aethionema arabicum HOM05D001092 ORTHO05D000923 3.1e-06 58.2 209 26.8
Cre17.g727600 Chlamydomonas reinhardtii HOM05D002653 ORTHO05D002623 3.1e-06 58.2 198 22.7
Cc03_g00400 Coffea canephora HOM05D001092 ORTHO05D000923 4.1e-06 57.8 232 26.7
CsaV3_3G015400 Cucumis sativus L. HOM05D001092 ORTHO05D000923 4.1e-06 57.8 223 26.5
Eucgr.H04089 Eucalyptus grandis HOM05D001092 ORTHO05D000923 4.1e-06 57.8 210 26.7
THA.LOC104802610 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 4.1e-06 57.8 209 26.8
CSS0029198 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 5.3e-06 57.4 194 27.3
Cpa.g.sc146.62 Carica papaya HOM05D001092 ORTHO05D000923 5.3e-06 57.4 194 26.8
Psat0s45g0040 Pisum sativum HOM05D001092 ORTHO05D000923 5.3e-06 57.4 209 26.8
SHI00082 Sapria himalayana HOM05D001092 ORTHO05D000923 5.3e-06 57.4 191 29.3
TPR.G12636 Trifolium pratense HOM05D001092 ORTHO05D000923 5.3e-06 57.4 209 26.8
HPP92_008100 Vanilla planifolia HOM05D001092 ORTHO05D000923 5.3e-06 57.4 209 25.8
GSVIVG01017643001 Vitis vinifera HOM05D001092 ORTHO05D000923 5.3e-06 57.4 209 26.3
CSS0037314 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 7.0e-06 57.0 235 25.5
Ca_21396_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 7.0e-06 57.0 209 26.8
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 7.0e-06 57.0 209 26.8
Oeu033616.1 Olea europaea HOM05D001092 ORTHO05D000923 9.1e-06 56.6 209 26.8
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 9.1e-06 56.6 209 26.3


User provided reference genes

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