Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 9.1e-267 923.3 576 100.0
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.1e-162 575.1 510 81.2
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 4.2e-139 499.2 562 65.3
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 4.7e-130 469.2 570 63.7
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 4.0e-97 359.8 571 46.9
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 5.2e-97 359.4 568 49.8
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 3.4e-96 356.7 584 48.3
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.9e-95 353.6 591 43.5
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 4.9e-95 352.8 588 52.9
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.5e-93 346.7 571 46.9
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 8.6e-92 342.0 599 40.2
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.5e-91 341.3 611 47.3
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.5e-91 340.5 573 45.5
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 2.1e-90 337.4 629 40.1
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 2.4e-89 334.0 642 41.9
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 8.9e-89 332.0 561 40.8
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.6e-88 330.5 582 49.3
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 7.6e-88 328.9 594 40.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 9.9e-88 328.6 580 49.8
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 2.2e-87 327.4 605 41.7
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.1e-86 325.1 508 54.3
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.1e-86 325.1 576 42.4
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 1.4e-86 324.7 615 49.9
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 1.9e-86 324.3 578 50.3
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 3.2e-86 323.6 617 45.7
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 3.2e-86 323.6 584 49.3
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 5.4e-86 322.8 619 49.6
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-85 321.6 618 39.2
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.2e-85 321.6 599 41.6
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 2.1e-85 320.9 617 47.3
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.3e-84 317.4 567 51.0
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 3.9e-84 316.6 546 42.1
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 5.1e-84 316.2 528 51.1
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 9.6e-83 312.0 604 41.7
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.8e-82 310.5 558 48.0
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 6.2e-82 309.3 577 37.4
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 5.3e-81 306.2 567 45.9
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 2.0e-80 304.3 527 45.9
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 4.4e-80 303.1 584 42.8
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 2.9e-79 300.4 619 45.1
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 8.4e-79 298.9 686 45.6
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 5.4e-78 296.2 601 40.6
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 7.1e-78 295.8 593 50.4
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 9.3e-78 295.4 580 46.2
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 1.6e-77 294.7 607 36.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.1e-77 294.3 540 43.0
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 3.5e-77 293.5 596 40.1
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.0e-77 292.7 594 50.3
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 6.0e-77 292.7 573 50.6
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.7e-76 291.2 613 44.7
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 2.3e-76 290.8 598 45.2
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.3e-76 290.8 573 50.3
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 6.6e-76 289.3 573 49.6
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.9e-75 287.7 575 44.2
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 5.6e-75 286.2 568 46.7
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 9.6e-75 285.4 617 45.5
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 2.8e-74 283.9 603 48.3
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 3.6e-74 283.5 547 50.8
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.1e-73 282.0 578 47.4
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 6.9e-73 279.3 557 40.2
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.0e-72 277.7 604 45.7
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 3.4e-72 276.9 604 45.5
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 5.8e-72 276.2 603 44.9
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 5.8e-72 276.2 576 40.1
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 9.9e-72 275.4 599 46.2
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 9.9e-72 275.4 580 43.3
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.3e-71 275.0 576 44.8
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.7e-71 274.6 593 43.5
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 2.2e-71 274.2 599 45.1
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 2.9e-71 273.9 570 39.5
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.8e-71 273.5 560 48.4
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.9e-70 271.2 586 46.2
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.9e-70 271.2 582 36.9
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 3.9e-68 263.5 586 45.2
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 5.1e-68 263.1 578 39.8
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.5e-67 261.5 572 44.6
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 2.5e-67 260.8 571 42.2
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.5e-67 260.8 571 42.2
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.6e-67 258.8 572 45.6
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 4.8e-66 256.5 518 48.6
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 6.2e-66 256.1 569 39.7
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.8e-65 254.6 628 40.8
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 5.3e-65 253.1 575 47.1
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 2.2e-63 247.7 587 40.2
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.9e-63 247.3 245 55.9
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 3.8e-63 246.9 510 52.9
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.4e-62 245.0 588 37.8
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 9.3e-62 242.3 550 38.4
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.0e-60 238.8 553 33.8
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 3.0e-60 237.3 608 38.2
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 8.7e-60 235.7 589 41.8
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 9.0e-57 225.7 614 42.3
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 9.0e-57 225.7 270 51.1
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 2.7e-53 214.2 320 45.6
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.8e-52 211.5 546 33.9
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.5e-51 208.4 148 71.6
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 7.4e-51 206.1 428 53.0
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 5.0e-47 193.4 245 46.1
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 6.5e-47 193.0 237 47.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 4.2e-46 190.3 234 49.6
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 3.6e-45 187.2 220 50.0
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 5.1e-44 183.3 507 36.7
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 5.1e-44 183.3 149 61.1
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 5.1e-44 183.3 149 61.1
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.1e-43 182.2 147 61.2
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 5.7e-43 179.9 148 62.2
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 1.3e-42 178.7 236 46.2
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 4.8e-42 176.8 238 45.4
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 8.2e-42 176.0 149 59.7
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 5.0e-39 166.8 227 44.5
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.1e-38 165.6 193 49.7
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.4e-38 165.2 606 38.6
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 3.2e-38 164.1 571 42.9
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 7.2e-38 162.9 148 56.1
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 1.2e-37 162.2 335 36.4
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 7.9e-37 159.5 458 41.0
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 7.9e-37 159.5 144 63.2
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.3e-36 157.9 201 49.3
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.6e-35 154.5 219 46.1
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 2.4e-33 147.9 89 71.9
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 3.1e-33 147.5 185 47.6
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 4.1e-33 147.1 89 70.8
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.2e-30 136.3 382 44.2
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.2e-30 136.3 382 44.2
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 2.1e-29 134.8 344 42.7
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 2.7e-29 134.4 145 54.5
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.6e-27 127.9 484 33.1
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 3.3e-27 127.5 215 38.1
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 9.1e-25 119.4 168 48.2
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 9.1e-25 119.4 96 59.4
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 7.7e-24 116.3 185 42.2
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.3e-23 115.5 138 52.2
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.2e-22 109.8 63 74.6
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.2e-22 109.8 63 74.6
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 5.2e-20 103.6 218 32.1
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.3e-18 99.0 132 52.3
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 1.7e-18 98.6 57 77.2
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 4.8e-18 97.1 119 53.8
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 6.3e-18 96.7 156 45.5
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 4.1e-17 94.0 82 62.2
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 8.5e-15 86.3 109 50.5
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 1.9e-14 85.1 218 31.7
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 2.6e-11 74.7 136 37.5
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 2.2e-10 71.6 106 44.3
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 3.7e-10 70.9 72 51.4
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.1e-09 69.3 50 60.0
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.1e-09 69.3 64 57.8
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 8.6e-07 59.7 46 52.2


User provided reference genes

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