Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 0.0e+00 1915.2 969 100.0
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 0.0e+00 1661.0 970 88.8
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 0.0e+00 1530.0 972 80.8
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 0.0e+00 1359.0 973 71.8
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 0.0e+00 1303.1 883 75.5
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 0.0e+00 1144.0 914 64.8
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 2.0e-287 992.6 957 55.9
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.8e-284 982.2 974 55.9
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 4.7e-284 981.5 980 56.0
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.3e-283 979.2 977 55.8
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 5.2e-283 978.0 1007 54.1
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.4e-282 975.3 984 55.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.4e-280 969.9 981 55.7
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.1e-280 967.6 982 55.6
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.7e-278 963.0 981 55.5
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 3.0e-278 962.2 980 54.0
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 3.9e-278 961.8 959 54.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 9.5e-277 957.2 997 54.7
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 6.2e-276 954.5 978 54.6
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 2.6e-274 949.1 979 54.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.9e-272 943.0 938 56.5
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.2e-271 940.3 983 53.4
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.1e-271 939.5 981 53.1
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.1e-269 933.7 903 56.4
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 2.8e-268 929.1 977 53.9
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 2.8e-268 929.1 959 53.6
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 4.7e-268 928.3 980 53.6
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.4e-267 926.8 945 54.7
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 7.6e-266 921.0 960 53.1
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.8e-265 918.7 966 52.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.6e-263 913.3 969 53.7
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 3.5e-263 912.1 932 52.7
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 7.8e-263 911.0 979 52.1
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.3e-262 909.4 981 52.2
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 3.9e-262 908.7 944 53.2
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.5e-261 906.0 1014 52.2
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.3e-261 905.2 985 53.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 5.6e-261 904.8 977 52.3
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-260 903.7 985 51.8
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.3e-260 903.7 986 51.3
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.1e-260 902.9 977 51.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.8e-260 902.5 982 51.6
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 3.6e-260 902.1 974 53.0
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.6e-260 902.1 987 51.1
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 3.6e-260 902.1 985 51.2
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 8.1e-260 901.0 971 52.6
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.4e-259 900.2 940 54.7
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.4e-259 900.2 960 52.2
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.4e-259 899.4 983 52.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 5.3e-259 898.3 933 53.6
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.3e-259 898.3 983 52.7
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 6.9e-259 897.9 979 51.6
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-257 893.6 983 51.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.4e-256 889.4 968 52.0
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 2.1e-255 886.3 966 51.0
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 2.7e-255 885.9 975 51.9
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.7e-255 885.9 964 51.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.1e-253 880.6 963 51.2
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.3e-252 877.1 1059 49.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 2.8e-252 875.9 962 51.2
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.1e-251 874.0 952 51.5
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 1.8e-251 873.2 958 51.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.6e-250 869.4 1010 49.4
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 7.6e-250 867.8 991 51.0
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 7.6e-250 867.8 991 51.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.9e-249 865.1 965 51.3
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 7.1e-248 861.3 822 57.5
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 6.0e-247 858.2 973 51.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 3.0e-246 855.9 976 50.6
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.6e-244 850.1 981 50.7
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.8e-244 848.6 658 64.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 5.8e-242 841.6 969 49.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.3e-241 840.5 968 49.1
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.4e-240 837.0 948 51.3
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 7.1e-240 834.7 950 49.7
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 3.3e-237 825.9 938 50.0
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 7.4e-237 824.7 974 49.0
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.2e-236 823.2 974 49.1
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.1e-235 820.8 964 49.6
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.8e-235 820.1 964 49.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.2e-234 817.4 947 49.6
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.5e-234 817.0 658 63.1
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 7.6e-234 814.7 976 48.3
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.3e-233 813.9 981 48.5
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.1e-232 810.8 664 61.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.1e-232 810.8 957 50.2
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.2e-232 809.3 983 49.3
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 3.2e-232 809.3 850 53.1
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.7e-231 806.2 844 54.0
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 3.3e-229 799.3 944 48.5
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 4.3e-229 798.9 982 47.9
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 2.5e-224 783.1 966 47.9
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 2.1e-223 780.0 972 47.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.3e-222 776.5 739 55.6
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 9.7e-221 771.2 999 46.3
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 2.2e-220 770.0 991 46.5
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.9e-214 749.2 1012 45.1
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.0e-213 746.9 807 52.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 4.4e-213 745.7 924 47.1
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 7.0e-211 738.4 656 57.9
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.8e-201 706.1 624 60.6
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 6.5e-201 705.3 673 56.3
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 2.1e-199 700.3 872 45.4
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 9.5e-192 674.9 658 52.7
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.2e-183 647.9 673 50.4
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.2e-182 642.5 741 49.3
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 8.9e-182 641.7 855 43.7
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 7.0e-179 632.1 953 42.8
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 4.6e-178 629.4 964 41.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 3.3e-176 623.2 461 69.0
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 3.1e-166 590.1 617 51.1
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.6e-162 577.8 713 45.3
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.6e-162 577.8 448 66.5
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 3.2e-155 553.5 689 45.0
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 7.6e-149 532.3 620 46.1
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 8.1e-143 512.3 765 41.0
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 4.0e-142 510.0 556 48.2
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.2e-141 508.4 491 52.5
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.5e-141 508.1 975 37.0
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.5e-138 496.9 721 43.1
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 3.7e-127 460.3 759 40.3
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.1e-123 448.7 665 41.7
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 5.1e-113 413.3 516 48.8
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 3.7e-111 407.1 730 35.3
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 3.5e-101 374.0 483 42.0
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.1e-98 364.8 287 65.5
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.2e-93 349.0 541 41.4
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 4.0e-89 334.0 433 46.2
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 8.8e-89 332.8 280 64.3
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.4e-78 297.0 193 73.1
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.4e-70 272.3 221 65.2
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 7.8e-69 266.5 236 61.4
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.1e-66 256.9 184 68.5
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.3e-65 255.0 244 57.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.9e-55 221.5 250 46.4
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.3e-49 201.8 171 64.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.8e-49 200.3 132 73.5
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 8.3e-47 193.4 158 62.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.9e-44 184.5 275 44.4
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.5e-43 181.8 328 37.8
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 6.8e-41 173.7 170 51.8
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 4.3e-35 154.5 561 27.6
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.3e-34 152.9 114 63.2
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.1e-27 129.8 78 80.8
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.6e-26 124.8 199 40.7
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 2.1e-18 99.0 96 47.9
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 6.5e-15 87.4 286 32.5
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.5e-13 81.6 43 86.0
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 3.0e-12 78.6 545 22.8
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.5e-11 75.5 326 26.4
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.6e-08 65.5 47 57.4


User provided reference genes

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