Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.3e-248 859.8 433 100.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.9e-241 838.2 433 97.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 2.4e-219 765.4 433 88.0
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 6.3e-212 740.7 434 87.3
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.1e-207 725.7 433 82.9
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.1e-199 699.1 436 81.2
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.8e-196 688.0 434 79.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.2e-194 683.3 434 79.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 7.7e-194 680.6 440 78.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.0e-189 666.0 434 77.6
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 7.5e-189 664.1 434 77.0
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 5.3e-187 657.9 408 79.7
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 4.5e-186 654.8 431 73.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.5e-186 654.8 464 72.4
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.9e-185 652.1 434 74.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 9.4e-184 647.1 462 72.1
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 4.0e-182 641.7 432 74.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 2.2e-180 636.0 431 73.8
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 5.9e-178 627.9 432 70.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 5.9e-178 627.9 434 73.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.0e-177 627.1 433 72.1
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.3e-177 626.7 435 72.6
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.3e-177 626.7 435 72.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.3e-177 625.9 436 73.2
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.3e-177 625.9 435 72.6
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.3e-177 625.9 435 73.3
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.0e-177 624.8 436 71.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 5.0e-177 624.8 435 71.3
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 6.6e-177 624.4 436 71.1
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.5e-176 623.2 432 71.8
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.9e-176 622.9 433 71.8
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.5e-176 622.5 434 73.3
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.5e-176 622.5 435 72.4
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 6.1e-175 617.8 436 70.6
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 6.1e-175 617.8 432 70.6
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.0e-174 617.1 435 71.3
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.3e-174 615.9 432 70.4
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.3e-174 615.9 432 71.3
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.0e-174 615.5 435 71.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.0e-174 615.5 434 71.4
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 3.0e-174 615.5 432 70.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 6.8e-174 614.4 445 69.9
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 6.8e-174 614.4 432 70.4
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 6.8e-174 614.4 435 72.0
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.4e-173 612.1 444 69.8
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.3e-172 610.1 436 69.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.7e-172 609.8 435 72.0
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.8e-172 609.0 435 70.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.7e-172 608.6 432 68.5
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.9e-172 608.2 435 70.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.4e-171 605.9 432 72.0
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.2e-170 603.6 436 69.0
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.5e-170 602.1 432 69.7
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.5e-168 595.9 432 69.4
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.8e-167 592.4 435 68.7
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.4e-165 585.5 432 68.8
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.4e-165 585.5 432 68.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 3.4e-165 585.5 432 65.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.4e-165 585.1 390 75.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 6.4e-164 581.3 451 63.9
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.4e-163 579.3 437 69.3
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 2.4e-163 579.3 452 64.4
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.4e-163 578.2 428 67.1
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.6e-162 576.6 390 74.9
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 6.6e-161 571.2 435 68.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.3e-160 568.5 399 69.4
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 4.7e-159 565.1 446 63.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.1e-158 562.4 438 68.3
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.2e-157 560.5 419 69.5
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.0e-157 559.7 435 64.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.2e-156 556.2 402 69.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 3.7e-156 555.4 438 66.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.4e-155 552.7 385 72.7
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.4e-155 552.7 431 62.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 7.0e-155 551.2 439 67.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 4.6e-154 548.5 434 65.4
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 6.0e-154 548.1 434 65.9
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.9e-152 543.1 445 63.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.5e-152 542.7 455 58.7
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.8e-151 539.3 434 61.3
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 4.7e-151 538.5 435 61.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.2e-150 535.0 432 64.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.2e-150 535.0 382 72.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.4e-149 531.9 346 77.2
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.7e-148 528.9 435 66.4
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 3.7e-148 528.9 436 62.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 5.4e-147 525.0 438 65.1
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.6e-146 523.5 429 61.1
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.1e-146 523.1 433 60.5
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.7e-146 522.7 447 59.1
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.7e-146 522.7 433 61.9
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 4.6e-146 521.9 433 59.4
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.3e-145 520.4 438 60.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.7e-145 520.0 420 62.6
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.5e-144 516.9 307 82.4
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.5e-144 516.9 377 69.0
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-144 516.5 453 58.3
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.9e-144 516.5 449 58.4
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.9e-144 516.5 368 72.3
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.5e-144 516.2 454 58.1
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.4e-142 510.4 393 67.9
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.4e-142 510.4 394 65.7
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.8e-142 510.0 471 61.6
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 5.2e-142 508.4 394 65.5
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.5e-141 506.9 455 57.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.4e-141 505.8 455 57.1
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 7.6e-141 504.6 393 64.1
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 9.9e-141 504.2 381 65.1
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.4e-139 500.4 432 60.4
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.7e-138 496.1 383 64.5
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.1e-136 490.7 302 80.5
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.2e-135 485.0 432 58.8
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.0e-134 482.3 429 58.7
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 4.2e-131 472.2 436 58.0
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.5e-125 453.8 352 65.9
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-124 450.3 424 54.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 7.9e-122 441.4 436 55.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.5e-120 437.2 430 55.8
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-116 424.1 331 64.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.3e-103 380.9 322 62.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.7e-103 379.4 280 68.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.3e-95 354.4 279 63.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.7e-95 354.0 279 63.4
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.1e-94 349.7 279 64.2
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 6.9e-94 348.6 191 85.3
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.6e-93 346.7 279 63.1
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-90 337.8 440 47.7
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.3e-89 333.6 350 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 3.0e-89 333.2 326 50.6
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.7e-88 328.2 279 60.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-86 324.7 293 56.3
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.2e-84 317.0 230 66.1
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-75 287.7 177 82.5
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.2e-75 286.6 366 45.4
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.2e-75 286.2 157 91.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.5e-75 285.8 159 89.9
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 6.1e-74 282.3 155 91.6
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 2.0e-72 277.3 156 89.1
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 3.4e-72 276.6 157 89.2
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.8e-71 273.5 169 71.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.7e-69 266.9 145 93.1
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 2.1e-66 257.3 515 36.9
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 8.8e-65 251.9 275 50.2
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.4e-62 242.7 141 85.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.9e-61 239.2 231 55.4
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.0e-60 238.4 133 91.0
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 3.0e-57 226.9 182 64.8
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 8.9e-57 225.3 184 64.1
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.4e-54 218.0 124 88.7
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 4.6e-53 213.0 154 62.3
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.8e-50 203.8 465 32.7
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.0e-49 199.9 306 41.8
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.6e-48 197.2 132 80.3
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 2.1e-42 177.6 99 90.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.8e-41 174.5 178 57.3
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 9.8e-40 168.7 106 79.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-37 161.8 129 62.8
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 3.2e-30 137.1 146 52.1
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.0e-28 132.1 116 56.9
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 9.9e-24 115.5 215 36.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-22 111.3 68 83.8
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.3e-20 104.4 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.0e-20 104.0 56 96.4
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.9e-20 103.6 105 55.2
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.7e-15 88.2 278 28.8
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 4.6e-13 80.1 57 70.2
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 5.8e-08 63.2 72 45.8
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-07 61.2 65 52.3


User provided reference genes

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