Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.1e-137 492.7 306 100.0
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.7e-107 393.3 306 73.5
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 2.0e-95 353.2 297 68.0
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.2e-94 349.7 304 74.3
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.3e-91 340.5 308 72.7
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.6e-89 332.4 297 73.4
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 4.6e-68 262.3 306 53.9
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 2.8e-65 253.1 298 51.0
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.8e-64 250.4 298 57.0
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.3e-64 248.8 264 55.7
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.5e-63 247.3 305 56.4
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.5e-63 247.3 306 54.9
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 3.4e-63 246.1 306 52.6
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.0e-62 244.6 290 60.0
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.9e-62 243.0 294 52.0
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.9e-62 243.0 298 56.4
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 3.8e-62 242.7 300 58.3
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 6.5e-62 241.9 298 56.0
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.1e-61 241.1 290 55.2
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.4e-61 240.7 294 51.4
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.5e-61 240.0 262 62.2
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.2e-61 239.2 310 55.8
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.2e-60 237.7 292 50.7
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.2e-60 237.7 305 55.1
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.2e-60 237.7 262 58.8
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.2e-60 237.7 285 55.1
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.7e-60 236.5 288 60.1
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 7.9e-60 235.0 296 49.0
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.0e-59 234.6 287 57.1
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.8e-59 233.8 305 47.9
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 2.3e-59 233.4 284 57.4
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 6.7e-59 231.9 261 52.9
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.1e-58 231.1 290 52.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.1e-58 231.1 291 49.5
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.5e-58 230.7 295 53.2
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.5e-58 230.7 307 55.0
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 3.3e-58 229.6 295 52.9
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 4.3e-58 229.2 277 54.5
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.3e-58 229.2 312 53.5
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.3e-58 229.2 281 50.9
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 4.3e-58 229.2 281 50.9
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 7.4e-58 228.4 265 52.1
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 7.4e-58 228.4 293 53.6
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 7.4e-58 228.4 304 47.7
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.3e-57 227.6 263 54.0
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.3e-57 227.6 291 55.3
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.8e-57 226.5 265 55.1
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.8e-57 226.5 281 50.2
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 3.7e-57 226.1 293 55.6
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.7e-57 226.1 287 48.8
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 3.7e-57 226.1 281 49.5
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.7e-57 226.1 281 49.5
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 4.8e-57 225.7 293 53.2
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 4.8e-57 225.7 306 51.6
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.3e-57 225.3 201 75.6
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 8.2e-57 224.9 295 50.8
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 8.2e-57 224.9 299 52.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.4e-56 224.2 310 51.6
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.8e-56 223.8 281 52.3
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-56 223.8 298 54.7
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-56 223.8 298 54.7
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.8e-56 223.8 298 54.7
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 3.1e-56 223.0 264 58.7
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 4.1e-56 222.6 301 54.8
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 5.3e-56 222.2 293 52.2
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.3e-56 222.2 284 52.8
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 6.9e-56 221.9 300 53.0
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 6.9e-56 221.9 269 57.6
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 6.9e-56 221.9 291 54.3
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 6.9e-56 221.9 266 58.3
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 9.0e-56 221.5 295 47.8
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.2e-55 221.1 307 52.1
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.5e-55 220.7 292 56.8
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.5e-55 220.7 309 50.8
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.0e-55 220.3 261 54.4
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 4.5e-55 219.2 265 54.7
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 4.5e-55 219.2 306 53.6
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 7.7e-55 218.4 262 54.6
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.0e-54 218.0 306 52.6
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.0e-54 218.0 306 50.3
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 1.0e-54 218.0 286 50.0
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.3e-54 217.6 296 47.0
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.3e-54 217.6 289 51.2
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-54 217.2 269 54.3
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.9e-54 216.5 256 58.2
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.8e-54 216.1 260 55.0
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 6.5e-54 215.3 297 52.2
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 6.5e-54 215.3 289 52.6
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 6.5e-54 215.3 290 51.7
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 8.5e-54 214.9 290 53.8
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.4e-53 214.2 301 50.2
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.5e-53 213.4 294 48.3
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.5e-53 212.2 265 51.7
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 9.4e-53 211.5 312 52.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 9.4e-53 211.5 249 51.0
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 9.4e-53 211.5 291 57.7
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.2e-52 211.1 290 53.1
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.6e-52 210.7 295 48.8
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.7e-52 209.9 257 62.3
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 6.1e-52 208.8 289 53.6
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.0e-51 208.0 311 49.8
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-51 207.6 291 52.2
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-51 207.6 291 52.2
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-51 207.6 291 52.2
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.4e-51 207.6 291 51.9
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.8e-51 207.2 293 47.8
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.8e-51 207.2 238 58.4
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.8e-51 207.2 289 51.6
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.0e-51 206.5 291 52.6
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 3.9e-51 206.1 321 50.5
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.1e-51 205.7 294 54.4
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.1e-50 204.5 294 48.3
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.5e-50 203.4 293 52.6
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 3.3e-50 203.0 288 53.1
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.3e-50 203.0 292 54.8
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 3.3e-50 203.0 264 53.4
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 9.7e-50 201.4 293 52.2
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.4e-48 197.6 272 59.2
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.4e-48 197.6 255 61.2
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.4e-48 196.8 286 51.0
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 5.3e-48 195.7 290 47.6
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 2.0e-47 193.7 290 45.9
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.1e-45 188.0 262 48.9
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.5e-45 186.8 305 43.0
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 4.2e-45 186.0 293 48.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 9.4e-45 184.9 286 51.7
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.1e-44 183.7 285 45.6
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 1.8e-43 180.6 286 48.3
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.3e-40 169.1 298 49.0
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.5e-39 166.4 283 42.0
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 6.5e-38 162.2 276 42.4
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.5e-37 161.0 135 58.5
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 5.5e-37 159.1 210 53.8
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.1e-36 155.6 260 48.1
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.2e-35 152.5 288 43.1
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 8.8e-35 151.8 210 47.1
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.1e-34 151.4 130 61.5
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.1e-34 151.4 274 43.8
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 7.4e-34 148.7 147 53.1
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 4.8e-33 146.0 126 61.1
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.6e-31 141.0 160 50.0
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 2.0e-31 140.6 267 38.6
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.7e-30 137.5 239 39.3
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 2.2e-30 137.1 273 38.1
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 5.0e-30 136.0 150 51.3
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.5e-30 135.6 121 57.9
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 6.5e-30 135.6 169 56.8
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 6.5e-30 135.6 169 56.8
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.7e-28 130.2 288 45.5
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 4.4e-26 122.9 273 39.2
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.7e-26 122.5 154 55.2
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 4.1e-24 116.3 292 34.2
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 9.1e-24 115.2 247 38.9
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.3e-22 111.3 93 71.0
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 2.2e-22 110.5 316 30.1
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.1e-21 108.2 189 54.0
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 5.5e-21 105.9 255 40.4
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.1e-20 104.0 102 53.9
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.7e-20 102.8 124 47.6
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 6.1e-20 102.4 167 45.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.3e-19 100.5 287 33.1
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 4.0e-19 99.8 308 32.8
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 5.2e-19 99.4 316 36.1
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.8e-19 98.6 189 52.9
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.2e-18 98.2 230 33.5
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 3.7e-17 93.2 206 34.0
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.9e-17 92.8 73 61.6
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 5.9e-15 85.9 193 40.4
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.9e-13 80.9 113 43.4
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 7.2e-13 79.0 74 55.4
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 2.6e-10 70.5 51 64.7
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 6.3e-09 65.9 290 30.0
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.8e-07 58.9 80 56.2
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 3.9e-06 56.6 57 56.1
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 6.6e-06 55.8 63 46.0


User provided reference genes

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