Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.0e-45 186.4 95 100.0
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 2.0e-38 162.2 90 90.0
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.1e-35 152.1 81 96.3
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.5e-33 146.0 94 81.9
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 2.6e-33 145.2 89 80.9
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.7e-32 141.4 88 79.5
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.8e-31 139.0 85 82.4
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.8e-31 139.0 89 75.3
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 5.3e-31 137.5 87 77.0
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 5.3e-31 137.5 91 74.7
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.0e-30 135.6 76 90.8
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.0e-30 135.6 87 75.9
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.0e-30 135.6 83 80.7
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 2.6e-30 135.2 80 83.8
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.6e-30 135.2 89 74.2
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 3.5e-30 134.8 83 80.7
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 5.9e-30 134.0 86 77.9
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 5.9e-30 134.0 79 81.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 7.7e-30 133.7 87 75.9
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.0e-29 133.3 81 80.2
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.0e-29 133.3 79 83.5
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.3e-29 132.9 86 76.7
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.3e-29 132.9 81 80.2
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.3e-29 132.9 85 74.1
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.7e-29 132.5 79 83.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 2.2e-29 132.1 88 75.0
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 2.9e-29 131.7 87 75.9
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.9e-29 131.7 79 81.0
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-29 131.7 83 77.1
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-29 131.7 88 77.3
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.8e-29 131.3 86 75.6
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 5.0e-29 131.0 94 73.4
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 5.0e-29 131.0 82 78.0
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 5.0e-29 131.0 87 75.9
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 6.5e-29 130.6 82 78.0
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.5e-29 130.6 81 79.0
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 6.5e-29 130.6 81 79.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 6.5e-29 130.6 79 82.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 6.5e-29 130.6 87 74.7
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 6.5e-29 130.6 87 74.7
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 6.5e-29 130.6 89 73.0
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 8.5e-29 130.2 79 81.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 8.5e-29 130.2 83 77.1
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.5e-29 130.2 79 81.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.1e-28 129.8 79 79.7
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.5e-28 129.4 82 76.8
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.9e-28 129.0 81 77.8
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.5e-28 128.6 81 76.5
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.5e-28 128.6 86 75.6
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.2e-28 128.3 79 81.0
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 4.2e-28 127.9 83 75.9
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 4.2e-28 127.9 79 78.5
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.2e-28 127.9 86 73.3
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 5.5e-28 127.5 82 75.6
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.5e-28 127.5 88 75.0
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 5.5e-28 127.5 88 75.0
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 5.5e-28 127.5 92 70.7
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 7.2e-28 127.1 84 72.6
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 9.4e-28 126.7 79 78.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 9.4e-28 126.7 79 78.5
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 9.4e-28 126.7 79 78.5
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.2e-27 126.3 79 78.5
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.2e-27 126.3 79 78.5
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.2e-27 126.3 83 75.9
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.2e-27 126.3 79 79.7
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.6e-27 125.9 88 72.7
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.6e-27 125.9 88 72.7
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.6e-27 125.9 88 72.7
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.1e-27 125.6 90 72.2
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.1e-27 125.6 79 75.9
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 2.1e-27 125.6 88 71.6
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.1e-27 125.6 81 77.8
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 2.1e-27 125.6 84 76.2
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.7e-27 125.2 79 75.9
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 2.7e-27 125.2 81 76.5
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 74.7
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 73.4
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 74.7
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 74.7
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 73.4
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 73.4
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 73.4
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 78.5
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 77.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 4.7e-27 124.4 79 78.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.1e-27 124.0 81 75.3
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 6.1e-27 124.0 79 79.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 8.0e-27 123.6 79 75.9
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 8.0e-27 123.6 79 75.9
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 8.0e-27 123.6 79 74.7
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.0e-26 123.2 81 76.5
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.0e-26 123.2 81 76.5
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.4e-26 122.9 87 71.3
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.8e-26 122.5 86 72.1
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 3.0e-26 121.7 84 70.2
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 4.0e-26 121.3 79 75.9
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 4.0e-26 121.3 82 70.7
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.2e-26 120.9 86 68.6
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 5.2e-26 120.9 81 72.8
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 6.7e-26 120.6 74 83.8
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 8.8e-26 120.2 76 81.6
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 8.8e-26 120.2 76 81.6
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.5e-25 119.4 74 82.4
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 2.6e-25 118.6 82 68.3
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 2.6e-25 118.6 82 68.3
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 2.6e-25 118.6 82 68.3
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 2.6e-25 118.6 77 79.2
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 4.4e-25 117.9 78 79.5
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.4e-25 117.9 76 81.6
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.7e-25 117.5 86 70.9
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 5.7e-25 117.5 81 76.5
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 7.5e-25 117.1 86 66.3
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 7.5e-25 117.1 81 71.6
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.5e-25 117.1 87 65.5
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.3e-24 116.3 74 78.4
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.7e-24 115.9 74 77.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.2e-24 115.5 81 76.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 6.3e-24 114.0 82 73.2
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 8.2e-24 113.6 69 85.5
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.1e-23 113.2 76 80.3
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.1e-23 113.2 74 75.7
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.8e-23 112.5 74 78.4
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.8e-23 112.5 74 77.0
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.4e-23 112.1 80 73.8
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.4e-23 112.1 80 73.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.1e-23 111.3 74 73.0
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.0e-21 106.7 83 68.7
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 3.8e-21 104.8 91 57.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.2e-19 99.8 73 71.2
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 6.1e-19 97.4 73 72.6
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.4e-18 96.3 80 58.8
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.8e-18 93.6 74 66.2
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.5e-17 92.8 77 61.0
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.0e-17 92.4 78 64.1
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.4e-17 91.7 60 73.3
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 4.4e-17 91.3 79 59.5
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.1e-15 86.7 82 57.3
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.0e-13 80.1 56 67.9
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.7e-13 79.3 74 59.5
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.7e-13 79.3 55 70.9
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.7e-13 79.3 55 70.9
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.9e-13 78.6 53 67.9
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 4.7e-11 71.2 50 68.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 6.8e-10 67.4 83 45.8
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.8e-07 59.3 40 72.5


User provided reference genes

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