Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1849.7 888 100.0
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1598.6 856 90.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1431.4 876 78.8
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1352.8 874 74.8
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1313.9 873 72.4
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1197.2 870 64.4
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1177.5 872 64.1
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1173.3 870 63.9
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1172.1 874 62.7
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1168.3 835 66.6
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 869 63.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1161.0 900 61.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 871 64.2
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1158.3 868 64.2
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 873 63.3
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 905 62.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 870 63.8
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1146.3 870 63.4
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1146.3 850 65.3
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1145.6 871 63.1
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 871 63.3
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1138.3 868 61.9
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1133.2 872 62.4
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1131.3 873 62.8
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 872 62.6
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1129.8 872 61.6
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 879 62.5
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 880 61.1
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1125.9 872 62.4
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1124.0 873 62.4
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 872 62.3
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 869 61.3
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 838 64.4
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 866 61.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1115.9 865 62.3
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1109.0 874 61.6
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1107.0 879 61.5
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1107.0 968 57.2
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 873 60.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1106.3 864 61.5
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1105.5 875 61.5
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1102.4 870 62.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1101.7 873 60.4
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1099.0 870 59.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1098.6 870 61.1
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1097.0 871 60.5
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1096.6 865 61.4
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 873 61.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1092.0 873 60.9
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1090.1 866 61.3
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1088.9 877 59.5
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1088.2 870 59.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1086.6 868 59.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1085.5 881 59.5
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1083.9 873 60.5
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1080.9 819 62.9
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1080.5 869 60.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1080.1 868 60.0
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1079.7 868 58.8
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1078.5 872 59.6
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1078.2 871 59.7
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 870 58.7
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1075.1 875 59.1
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 6.1e-312 1073.9 871 60.5
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 6.1e-312 1073.5 816 62.9
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.2e-311 1072.8 878 59.5
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.3e-311 1070.5 873 59.0
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 9.1e-311 1070.1 876 59.8
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 4.6e-310 1067.8 893 58.3
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 866 59.5
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 876 59.8
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 6.6e-309 1063.9 867 58.1
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 3.3e-308 1061.6 870 60.9
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 9.6e-308 1060.1 872 59.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 4.8e-307 1057.7 876 59.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 6.2e-307 1057.4 878 60.1
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.8e-306 1055.8 802 62.1
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.1e-306 1055.0 875 60.0
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 7.6e-305 1050.4 871 60.0
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 9.9e-305 1050.0 870 58.7
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 3.8e-304 1048.1 892 59.6
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 8.4e-304 1047.0 872 59.7
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 2.4e-303 1045.4 872 59.9
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 4.2e-303 1044.6 874 59.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 9.3e-303 1043.5 865 57.9
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 6.0e-302 1040.8 906 57.8
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 7.4e-300 1033.9 864 57.5
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.3e-299 1033.1 865 57.6
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.8e-299 1031.9 865 58.5
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 3.6e-299 1031.6 871 58.4
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.7e-296 1022.7 890 57.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.8e-290 1002.7 840 57.9
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.4e-290 1002.3 843 57.1
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.7e-288 996.1 743 63.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 3.2e-287 991.9 867 56.5
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.8e-285 986.1 790 59.4
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.3e-285 985.7 769 60.2
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 3.9e-285 984.9 793 58.9
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.2e-281 973.4 792 58.7
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.4e-281 971.8 734 62.5
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.5e-281 971.5 788 60.3
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 4.5e-281 971.5 795 58.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 5.9e-281 971.1 805 57.9
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.0e-280 970.3 789 58.8
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 2.2e-280 969.1 670 69.1
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.2e-278 963.4 799 57.4
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-278 963.4 874 56.5
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 7.9e-278 960.7 871 55.1
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 5.1e-277 958.0 895 53.2
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.3e-276 955.3 938 52.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 4.3e-276 954.9 824 57.0
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 7.4e-276 954.1 859 54.2
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 2.4e-274 949.1 793 57.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.6e-273 945.7 793 57.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.4e-266 922.5 752 58.8
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 6.9e-266 921.0 793 56.7
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 8.2e-251 870.9 841 53.0
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 5.9e-249 864.8 820 52.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.6e-238 828.9 827 48.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.2e-233 813.9 786 51.7
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 6.4e-227 791.6 624 61.7
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 5.4e-226 788.5 813 49.4
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 3.0e-224 782.7 850 47.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 5.6e-223 778.5 874 44.4
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.6e-212 743.0 643 57.2
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 7.5e-212 741.5 809 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.7e-201 706.4 715 48.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.7e-200 703.7 792 47.0
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.6e-190 670.6 427 72.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 2.0e-188 663.7 678 51.3
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.9e-188 661.4 492 64.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 6.0e-177 625.5 608 52.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.1e-173 614.8 424 65.1
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 6.7e-168 595.5 480 59.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.9e-167 594.0 524 54.8
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.0e-160 571.6 686 46.4
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 6.3e-158 562.4 421 61.3
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.4e-157 561.2 879 37.2
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-144 518.1 596 47.5
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 4.5e-124 449.9 821 35.8
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 2.9e-123 447.2 409 53.8
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.4e-117 428.3 333 59.8
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.3e-115 421.0 438 50.5
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.5e-114 418.3 315 59.4
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.5e-106 391.0 264 67.4
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 2.5e-98 364.4 440 44.3
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 5.2e-96 356.7 417 46.0
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 8.9e-96 355.9 306 55.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.8e-78 297.4 824 28.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 3.8e-78 297.4 237 60.3
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 2.7e-76 291.2 534 32.6
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 9.3e-61 239.6 197 58.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.6e-60 238.8 211 57.3
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.7e-51 206.8 167 55.7
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.5e-47 195.7 100 82.0
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.2e-45 188.0 132 63.6
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.4e-37 162.5 100 71.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 9.7e-34 149.8 155 46.5
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 9.7e-34 149.8 187 42.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.2e-28 132.9 129 51.9
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 2.6e-23 115.2 86 60.5
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.8e-19 102.4 96 55.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.8e-19 102.4 83 57.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.8e-19 102.4 69 65.2
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.3e-17 96.3 123 47.2
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.8e-17 95.1 72 65.3
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 7.7e-15 87.0 61 62.3
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 4.2e-13 81.3 107 41.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-12 78.6 96 43.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-12 78.2 95 44.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.1e-12 77.4 38 81.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.8e-11 75.9 37 83.8
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.3e-11 75.5 44 77.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 2.0e-10 72.4 59 55.9
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 8.3e-09 67.0 64 53.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.6e-07 62.8 39 61.5


User provided reference genes

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