Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.4e-112 407.9 199 100.0
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 3.4e-88 328.6 250 68.8
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 4.6e-77 291.6 260 60.4
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 9.1e-65 250.8 253 52.2
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 2.6e-64 249.2 252 54.8
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 2.9e-63 245.7 249 50.6
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 6.5e-63 244.6 257 51.4
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.5e-63 244.6 254 52.4
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 3.2e-62 242.3 258 50.8
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 4.2e-62 241.9 261 51.3
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 2.7e-61 239.2 256 50.4
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 2.7e-61 239.2 249 50.2
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 3.6e-61 238.8 249 51.4
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.9e-61 237.7 232 54.3
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 7.9e-61 237.7 253 50.6
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 2.3e-60 236.1 253 50.2
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 3.0e-60 235.7 251 49.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.9e-60 235.3 248 50.4
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 5.1e-60 235.0 253 49.8
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 5.1e-60 235.0 253 51.4
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 8.8e-60 234.2 254 49.6
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 1.5e-59 233.4 253 50.2
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 1.5e-59 233.4 257 50.2
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 2.0e-59 233.0 249 49.0
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 2.0e-59 233.0 255 49.0
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 2.0e-59 233.0 254 50.4
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 2.6e-59 232.6 258 50.0
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 3.3e-59 232.3 256 49.6
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.3e-59 232.3 253 49.8
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 3.3e-59 232.3 254 49.2
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 5.7e-59 231.5 256 49.6
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 5.7e-59 231.5 253 49.0
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 9.7e-59 230.7 257 49.4
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 9.7e-59 230.7 263 49.8
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 9.7e-59 230.7 254 50.0
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 1.3e-58 230.3 255 49.8
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 1.7e-58 229.9 258 49.2
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.7e-58 229.9 247 49.4
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 2.2e-58 229.6 255 49.8
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.2e-58 229.6 251 50.2
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 2.8e-58 229.2 246 49.2
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 2.8e-58 229.2 254 50.0
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 2.8e-58 229.2 271 49.4
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 3.7e-58 228.8 257 50.2
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 3.7e-58 228.8 250 49.6
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 6.3e-58 228.0 249 49.0
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 8.2e-58 227.6 252 48.4
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.1e-57 227.3 254 48.4
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.1e-57 227.3 253 49.8
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 1.4e-57 226.9 258 49.2
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.8e-57 226.5 251 48.6
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 1.8e-57 226.5 258 48.4
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 1.8e-57 226.5 255 48.6
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.8e-57 226.5 249 47.4
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.8e-57 226.5 246 48.8
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 1.8e-57 226.5 258 48.8
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 2.4e-57 226.1 258 47.7
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 6.9e-57 224.6 262 48.1
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 6.9e-57 224.6 251 49.4
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 9.1e-57 224.2 251 49.8
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 1.2e-56 223.8 255 48.6
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.2e-56 223.8 253 47.8
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 2.0e-56 223.0 254 48.0
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 2.0e-56 223.0 251 48.6
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 2.6e-56 222.6 252 49.2
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 1.0e-55 220.7 251 46.2
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 1.7e-55 219.9 260 48.1
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 1.7e-55 219.9 251 49.0
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 2.2e-55 219.5 253 48.6
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 2.2e-55 219.5 254 48.8
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 3.8e-55 218.8 242 50.0
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 5.0e-55 218.4 254 48.8
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.4e-54 216.9 241 49.8
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 7.2e-54 214.5 250 47.2
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 2.1e-53 213.0 186 59.1
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 6.1e-53 211.5 263 47.5
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 1.4e-52 210.3 250 44.8
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 3.9e-52 208.8 182 58.2
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 3.9e-52 208.8 182 58.2
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 2.0e-51 206.5 236 47.9
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 2.6e-51 206.1 248 46.4
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 4.8e-50 201.8 229 48.0
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 8.2e-50 201.1 259 41.7
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.0e-49 198.0 213 51.2
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 1.2e-48 197.2 236 47.5
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 3.8e-47 192.2 255 45.5
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 8.5e-47 191.0 235 45.5
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 1.1e-46 190.7 233 44.6
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 1.2e-45 187.2 207 50.7
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 8.0e-45 184.5 166 56.6
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 6.7e-44 181.4 165 57.0
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.0e-43 179.9 235 44.7
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 3.3e-43 179.1 184 52.7
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 1.8e-41 173.3 168 51.8
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 4.5e-40 168.7 174 50.6
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.5e-38 163.7 117 70.1
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 9.4e-38 161.0 153 51.0
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 1.6e-37 160.2 245 40.4
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 1.8e-36 156.8 361 30.2
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 2.6e-35 152.9 160 51.2
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.8e-33 146.7 246 35.8
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 5.5e-30 135.2 234 36.3
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 4.4e-27 125.6 133 49.6
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 3.7e-26 122.5 124 50.0
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 3.7e-26 122.5 124 50.0
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 3.7e-26 122.5 124 50.0
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.1e-25 120.9 139 47.5
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 2.7e-24 116.3 119 50.4
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 3.5e-24 115.9 140 47.1
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 2.3e-23 113.2 123 48.0
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 5.6e-22 108.6 117 51.3
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.6e-21 105.9 95 58.9
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.5e-19 100.5 102 52.0
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.8e-19 97.8 85 61.2
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.8e-19 97.8 85 61.2
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-18 97.1 131 39.7
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.7e-18 95.9 85 60.0
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.4e-17 93.2 232 30.2
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 8.6e-15 84.7 128 38.3
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.6e-13 80.5 69 55.1
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.8e-13 79.7 42 90.5
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.1e-12 76.3 74 54.1
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 4.0e-12 75.9 63 58.7
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.4e-11 72.4 71 56.3
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.8e-11 72.0 56 69.6
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 2.9e-10 69.7 132 35.6
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 1.1e-09 67.8 56 58.9
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.6e-08 62.4 53 56.6
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 4.3e-06 55.8 92 35.9


User provided reference genes

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