Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.2e-91 339.7 167 100.0
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.3e-90 335.5 166 98.2
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 2.9e-72 275.4 172 78.5
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 7.9e-62 240.7 158 72.8
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 1.8e-58 229.6 168 66.7
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 3.1e-58 228.8 168 67.3
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 2.6e-57 225.7 161 65.8
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 7.6e-57 224.2 166 65.1
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.4e-55 219.2 162 64.2
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 3.2e-55 218.8 170 64.7
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 3.2e-55 218.8 168 62.5
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.2e-54 216.9 174 60.3
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.2e-54 216.9 174 60.3
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.1e-54 216.1 165 60.6
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 3.5e-54 215.3 166 62.0
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 3.5e-54 215.3 166 62.7
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 3.5e-54 215.3 169 63.3
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 4.6e-54 214.9 171 62.0
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 6.0e-54 214.5 166 62.0
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 3.0e-53 212.2 169 60.9
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.9e-53 211.8 169 60.9
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 3.9e-53 211.8 165 57.6
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 5.1e-53 211.5 165 61.8
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.1e-53 211.5 164 62.8
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 6.7e-53 211.1 164 64.0
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 6.7e-53 211.1 165 61.2
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 6.7e-53 211.1 164 65.9
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.7e-53 210.7 172 63.4
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.9e-52 209.5 172 62.2
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.9e-52 209.5 165 60.6
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.9e-52 209.5 172 61.6
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 2.5e-52 209.1 170 61.8
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 5.6e-52 208.0 169 60.4
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 7.4e-52 207.6 169 60.9
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 9.6e-52 207.2 161 60.9
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 1.6e-51 206.5 171 60.2
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 3.7e-51 205.3 157 62.4
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 6.2e-51 204.5 160 61.9
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 6.2e-51 204.5 163 62.0
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 1.1e-50 203.8 165 60.6
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.1e-50 203.8 172 60.5
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.1e-50 203.8 170 60.0
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 1.1e-50 203.8 163 62.0
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.1e-50 203.8 163 62.0
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.4e-50 203.4 160 63.1
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.4e-50 203.4 173 59.0
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.8e-50 203.0 171 61.4
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.8e-50 203.0 170 60.6
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 2.4e-50 202.6 169 59.8
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 3.1e-50 202.2 167 58.1
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 3.1e-50 202.2 162 60.5
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 3.1e-50 202.2 164 61.0
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 3.1e-50 202.2 162 60.5
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 4.0e-50 201.8 157 60.5
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 5.3e-50 201.4 162 58.6
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 5.3e-50 201.4 162 58.6
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 5.3e-50 201.4 160 63.8
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 5.3e-50 201.4 163 60.7
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 6.9e-50 201.1 168 59.5
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 2.0e-49 199.5 162 59.3
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 2.0e-49 199.5 160 61.2
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 3.4e-49 198.7 161 60.2
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 4.5e-49 198.4 161 60.2
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 4.5e-49 198.4 161 60.2
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 4.5e-49 198.4 159 59.1
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 4.5e-49 198.4 158 58.2
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 5.8e-49 198.0 158 59.5
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 1.0e-48 197.2 164 57.9
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 1.0e-48 197.2 161 58.4
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 1.3e-48 196.8 164 56.7
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 1.3e-48 196.8 165 59.4
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 8.4e-48 194.1 155 61.9
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.9e-47 193.0 167 56.9
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 1.9e-47 193.0 166 58.4
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 3.2e-47 192.2 154 60.4
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.2e-47 192.2 159 55.3
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 3.2e-47 192.2 159 60.4
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 9.3e-47 190.7 163 55.8
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 2.7e-46 189.1 158 60.8
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 2.7e-46 189.1 166 57.2
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 1.3e-45 186.8 162 58.0
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 1.3e-45 186.8 161 55.9
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.8e-45 186.4 165 55.8
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 1.8e-45 186.4 160 55.0
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 3.0e-45 185.7 174 52.3
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 6.7e-45 184.5 166 55.4
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 7.4e-44 181.0 170 52.9
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.3e-43 177.9 163 57.1
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 3.4e-41 172.2 159 57.2
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 7.6e-41 171.0 158 52.5
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 6.5e-40 167.9 161 54.0
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 9.3e-39 164.1 117 70.1
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.4e-37 160.2 129 62.0
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 3.0e-37 159.1 154 50.0
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 2.8e-35 152.5 172 44.2
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 8.2e-35 151.0 91 80.2
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.9e-34 147.9 140 57.9
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 1.5e-33 146.7 162 48.1
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 1.1e-31 140.6 120 58.3
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 7.2e-31 137.9 117 60.7
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 4.7e-30 135.2 159 45.3
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 7.9e-30 134.4 160 45.0
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 1.4e-29 133.7 145 47.6
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 2.3e-29 132.9 115 54.8
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 1.8e-26 123.2 101 59.4
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 3.4e-25 119.0 88 60.2
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 5.5e-23 111.7 161 41.0
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.6e-22 109.0 161 41.0
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.3e-21 106.3 87 50.6
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 4.1e-18 95.5 143 39.9
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 1.4e-13 80.5 86 52.3
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.1e-10 69.3 51 54.9
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 1.9e-07 60.1 59 49.2
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 3.2e-07 59.3 59 49.2
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.5e-07 58.5 50 52.0
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.5e-07 58.5 50 52.0
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.2e-07 58.2 50 52.0


User provided reference genes

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