Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.1e-278 962.6 480 100.0
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.9e-274 947.2 480 97.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.1e-255 884.0 477 91.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.9e-249 865.5 465 90.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.2e-243 846.3 480 88.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.9e-242 841.6 478 86.4
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 8.7e-239 830.1 464 86.9
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.5e-238 828.6 472 85.2
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 5.6e-238 827.4 475 85.1
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 7.4e-238 827.0 464 85.8
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 4.8e-237 824.3 475 85.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 6.9e-236 820.5 465 85.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.6e-235 818.5 474 83.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.0e-234 816.6 479 82.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.7e-234 815.8 472 83.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.2e-234 815.5 462 84.8
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 2.2e-234 815.5 462 84.6
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.2e-234 815.5 472 84.5
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 8.4e-234 813.5 461 85.5
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.4e-233 812.8 465 83.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.9e-233 812.4 470 84.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 2.5e-233 812.0 472 83.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.2e-233 811.6 473 83.9
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.2e-233 811.2 470 83.6
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 4.2e-233 811.2 474 83.1
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 9.3e-233 810.1 472 83.7
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.2e-232 809.7 462 84.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.2e-232 809.7 472 82.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.6e-232 809.3 459 84.7
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.6e-232 809.3 472 83.3
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.1e-232 808.9 463 84.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 4.6e-232 807.7 472 83.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 4.6e-232 807.7 473 82.9
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 7.9e-232 807.0 462 83.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 7.9e-232 807.0 472 82.8
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 7.9e-232 807.0 479 81.8
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 3.0e-231 805.1 458 84.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 6.7e-231 803.9 461 85.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 8.7e-231 803.5 465 84.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-230 802.4 464 84.3
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.5e-230 802.0 463 82.5
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 4.3e-230 801.2 459 84.1
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 5.7e-230 800.8 472 81.1
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.4e-230 800.4 461 83.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 7.4e-230 800.4 459 83.4
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 9.7e-230 800.0 461 82.9
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.6e-229 799.3 463 84.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.7e-229 798.1 461 82.9
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.8e-229 797.7 471 81.3
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.4e-228 795.4 463 82.1
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.4e-228 795.4 474 81.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.1e-228 795.0 463 83.8
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 5.3e-228 794.3 462 82.9
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 9.0e-228 793.5 461 82.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.0e-227 792.3 475 82.3
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 4.5e-227 791.2 463 82.3
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 4.5e-227 791.2 461 84.2
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.7e-227 790.4 470 80.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.3e-226 789.6 466 81.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.7e-226 789.3 459 83.7
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.5e-226 787.3 462 82.7
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 8.5e-226 786.9 459 81.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.4e-225 786.2 459 81.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.9e-225 785.8 493 78.5
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.5e-225 785.4 471 80.9
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.5e-225 785.4 483 79.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.2e-225 784.6 483 80.3
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 7.2e-225 783.9 466 80.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.2e-224 783.1 459 80.8
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.6e-224 782.7 465 81.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.6e-224 782.7 471 79.2
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.1e-224 782.3 461 82.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.1e-224 782.3 493 78.3
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.6e-224 781.2 459 81.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.8e-223 779.2 469 80.2
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.8e-223 779.2 474 79.5
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 6.7e-223 777.3 469 79.7
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 6.7e-223 777.3 469 80.0
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.8e-223 776.9 416 90.9
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.1e-222 776.5 469 79.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.5e-222 776.2 472 80.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.5e-222 776.2 464 80.2
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.5e-222 776.2 462 80.1
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.5e-222 775.4 469 79.5
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 5.7e-222 774.2 464 81.9
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 7.4e-222 773.9 471 79.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 9.7e-222 773.5 470 79.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.3e-221 773.1 492 76.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.7e-221 772.7 468 79.9
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.8e-220 769.2 471 78.6
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.1e-220 768.5 459 80.8
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.6e-219 765.4 471 78.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.0e-218 763.5 471 78.1
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.0e-218 763.5 511 74.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.9e-218 761.9 513 74.3
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.9e-217 759.2 474 78.7
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.2e-217 758.4 462 78.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.6e-216 755.0 489 76.1
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.4e-215 753.1 490 75.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.3e-214 748.4 480 75.2
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.8e-213 745.3 467 78.6
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.0e-210 736.9 471 76.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.7e-208 728.8 458 74.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 6.3e-205 717.6 473 76.1
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.1e-204 714.9 463 73.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 9.1e-204 713.8 460 73.5
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.6e-203 712.2 459 76.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.7e-202 709.5 407 83.5
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.8e-202 708.4 469 72.3
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 8.5e-202 707.2 474 73.6
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.5e-198 696.4 378 90.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.4e-198 695.3 457 72.4
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.7e-197 693.0 481 72.3
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.3e-196 688.0 382 87.7
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 7.0e-196 687.6 382 87.7
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 2.5e-193 679.1 446 75.3
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.4e-191 673.3 463 74.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.8e-188 662.9 373 84.7
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 7.0e-188 661.0 373 84.5
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.3e-186 656.0 471 71.5
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-184 650.2 453 71.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.2e-181 639.4 714 50.3
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 9.2e-180 634.0 453 66.7
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.6e-179 633.3 378 84.1
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-177 627.1 435 71.7
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 7.3e-177 624.4 469 69.1
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.4e-172 610.1 324 92.9
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 5.4e-172 608.2 453 67.8
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-158 563.9 391 74.7
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 6.7e-122 441.8 326 70.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 4.8e-120 435.6 259 83.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.6e-112 410.6 238 83.2
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-100 370.5 259 74.5
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 7.2e-100 368.6 292 62.3
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.1e-95 352.8 446 42.2
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 9.4e-92 341.7 448 40.4
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.0e-91 338.6 200 81.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.3e-85 321.2 454 39.4
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.8e-80 303.5 225 68.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.2e-76 289.7 400 46.0
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 3.5e-62 243.4 131 86.3
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 8.0e-59 232.3 138 81.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.7e-54 217.2 170 61.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 6.0e-54 216.1 196 59.7
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 7.8e-54 215.7 165 68.5
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.9e-44 184.5 98 88.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.3e-44 183.3 249 43.4
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.2e-43 181.8 123 64.2
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-42 177.2 131 61.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.6e-41 172.6 378 29.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 3.2e-39 167.2 90 88.9
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 5.1e-37 159.8 122 63.9
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.6e-33 147.5 93 81.7
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.4e-33 147.1 80 85.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.4e-31 141.0 124 51.6
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 3.0e-29 134.0 100 67.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.9e-28 131.3 74 86.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 9.6e-28 129.0 290 30.3
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 4.8e-27 126.7 100 65.0
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.1e-12 79.0 67 56.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 3.3e-12 77.4 47 72.3
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 5.6e-12 76.6 56 57.1
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 7.4e-12 76.3 40 85.0
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 4.8e-11 73.6 66 60.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 3.8e-08 63.9 35 77.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 2.5e-07 61.2 38 76.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.5e-07 60.1 34 76.5
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 1.2e-06 58.9 278 27.3


User provided reference genes

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