Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 3.0e-193 678.3 339 100.0
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 6.9e-190 667.2 339 97.6
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.7e-172 609.4 339 88.2
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.1e-170 602.4 339 85.8
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.3e-169 599.0 339 85.5
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.3e-169 599.0 339 85.5
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.3e-169 599.0 339 85.5
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 6.7e-169 597.4 339 85.3
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.0e-168 595.9 339 85.5
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 2.6e-168 595.5 339 84.7
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 2.6e-168 595.5 338 84.6
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 7.4e-168 594.0 337 84.3
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 9.7e-168 593.6 339 83.8
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 9.7e-168 593.6 339 83.8
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 2.2e-167 592.4 339 84.4
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 6.3e-167 590.9 339 84.1
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 1.4e-166 589.7 339 84.7
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.4e-166 589.7 338 84.6
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.4e-166 589.0 339 83.5
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 2.4e-166 589.0 336 84.8
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 2.4e-166 589.0 339 84.7
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 5.3e-166 587.8 336 84.5
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 5.3e-166 587.8 339 81.7
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 6.9e-166 587.4 339 82.9
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 6.9e-166 587.4 333 84.7
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 9.1e-166 587.0 333 84.7
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.2e-165 586.6 338 82.5
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.5e-165 586.3 328 85.7
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 1.5e-165 586.3 339 84.1
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 2.0e-165 585.9 336 84.5
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 2.0e-165 585.9 339 83.2
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 2.0e-165 585.9 339 83.8
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 2.0e-165 585.9 339 84.1
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 3.4e-165 585.1 339 83.5
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 4.5e-165 584.7 339 82.0
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 4.5e-165 584.7 339 83.5
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 5.9e-165 584.3 339 82.0
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 7.7e-165 583.9 341 83.6
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 7.7e-165 583.9 339 82.6
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.0e-164 583.6 339 81.7
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.3e-164 583.2 339 83.2
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 2.2e-164 582.4 336 83.0
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 3.8e-164 581.6 336 82.7
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 3.8e-164 581.6 336 82.4
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 5.0e-164 581.3 339 82.9
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 8.5e-164 580.5 339 82.0
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 8.5e-164 580.5 339 83.5
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 1.4e-163 579.7 339 82.3
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.4e-163 579.7 339 82.6
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.9e-163 579.3 339 82.6
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.5e-163 578.9 339 81.4
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.5e-163 578.9 333 83.8
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.2e-163 578.2 339 83.8
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 5.5e-163 577.8 338 84.6
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 7.2e-163 577.4 336 83.3
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 7.2e-163 577.4 339 82.3
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 7.2e-163 577.4 339 82.9
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 9.4e-163 577.0 339 81.7
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 1.2e-162 576.6 328 85.1
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 2.1e-162 575.9 339 81.1
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 3.6e-162 575.1 339 81.7
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 6.1e-162 574.3 339 81.4
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 1.4e-161 573.2 339 82.9
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.8e-161 572.8 339 83.2
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 1.8e-161 572.8 332 83.4
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 3.0e-161 572.0 342 81.3
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 3.9e-161 571.6 339 82.9
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 6.7e-161 570.9 362 76.8
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 8.8e-161 570.5 342 81.6
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 8.8e-161 570.5 339 83.5
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.1e-160 570.1 340 82.1
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 1.1e-160 570.1 339 80.5
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 1.1e-160 570.1 339 80.5
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.0e-160 569.3 339 82.9
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.0e-160 569.3 339 82.9
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.0e-160 569.3 339 80.8
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.6e-160 568.9 327 83.5
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 4.4e-160 568.2 340 81.8
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 5.7e-160 567.8 342 81.3
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 5.7e-160 567.8 376 74.7
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 1.3e-159 566.6 342 81.3
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 1.3e-159 566.6 342 81.0
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 1.7e-159 566.2 333 82.0
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 2.4e-158 562.4 333 81.7
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 2.4e-158 562.4 333 81.7
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 3.1e-158 562.0 339 80.2
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 4.1e-158 561.6 339 80.2
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 7.0e-158 560.8 339 80.2
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 9.1e-158 560.5 339 82.0
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 1.2e-157 560.1 339 80.2
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 2.0e-157 559.3 339 79.1
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.5e-157 558.5 312 87.5
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 3.5e-157 558.5 339 80.2
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 1.0e-156 557.0 339 80.2
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 1.0e-156 557.0 328 80.8
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 2.2e-156 555.8 339 80.2
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 3.8e-156 555.1 328 80.2
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 6.5e-156 554.3 339 79.9
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.1e-155 553.5 345 78.3
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 4.2e-155 551.6 369 75.6
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 6.1e-154 547.7 339 79.1
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 6.7e-153 544.3 345 76.5
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 1.5e-152 543.1 339 77.3
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.6e-152 542.3 339 78.2
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 6.3e-151 537.7 394 70.6
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 6.3e-151 537.7 315 82.2
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 4.5e-149 531.6 344 76.7
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 7.2e-147 524.2 339 74.9
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 2.3e-145 519.2 334 75.4
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 8.8e-145 517.3 339 72.9
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 1.5e-144 516.5 339 73.7
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 2.0e-141 506.1 343 73.2
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 2.7e-141 505.8 339 74.3
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 3.8e-140 501.9 338 71.9
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 2.6e-136 489.2 312 75.0
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 1.8e-134 483.0 336 70.5
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 3.8e-132 475.3 310 73.9
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 4.9e-119 431.8 333 66.4
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 8.3e-119 431.0 315 67.0
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 3.5e-117 425.6 339 65.2
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 6.2e-114 414.8 249 81.1
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 4.4e-112 408.7 252 77.4
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 8.3e-111 404.4 239 82.4
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 4.6e-109 398.7 245 80.8
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 7.8e-109 397.9 249 79.1
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 9.5e-107 391.0 327 62.1
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 2.9e-103 379.4 231 78.4
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 8.4e-103 377.9 219 82.2
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 3.0e-100 369.4 208 87.0
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 7.3e-99 364.8 220 78.6
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.7e-93 346.3 194 86.6
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 1.6e-90 337.0 325 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 1.2e-88 330.9 207 75.8
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 6.4e-87 325.1 190 81.6
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.6e-82 310.5 322 52.8
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 9.3e-78 294.7 242 63.2
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.4e-73 280.0 171 80.1
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 1.2e-72 277.7 195 68.2
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 6.5e-63 245.4 135 88.1
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 6.1e-61 238.8 145 78.6
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.0e-52 211.5 151 67.5
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 1.8e-49 200.7 155 64.5
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.4e-44 184.5 148 67.6
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-38 164.9 87 93.1
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 4.8e-34 149.4 96 76.0
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 4.1e-33 146.4 102 65.7
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 3.5e-32 143.3 104 65.4
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 7.7e-32 142.1 85 84.7
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.6e-29 133.3 87 73.6
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 3.6e-29 133.3 74 82.4
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 8.0e-29 132.1 78 76.9
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 7.7e-24 115.5 89 61.8
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.2e-22 109.8 127 52.8
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 3.0e-20 103.6 322 28.9
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 1.5e-19 101.3 124 53.2
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 3.2e-17 93.6 108 45.4
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 9.2e-17 92.0 286 29.7
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 9.2e-17 92.0 73 63.0
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.0e-16 90.9 77 54.5
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 2.0e-16 90.9 235 28.9
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 1.3e-15 88.2 308 27.6
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 2.3e-12 77.4 273 30.0
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.6e-11 73.9 103 46.6
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 1.3e-10 71.6 191 30.4
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 4.9e-10 69.7 53 66.0
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 4.6e-08 63.2 42 66.7
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.0e-07 62.0 45 66.7


User provided reference genes

Program Settings