Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 0.0e+00 1444.1 990 100.0
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 0.0e+00 1290.8 1018 90.0
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 0.0e+00 1174.1 1025 85.6
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 0.0e+00 1089.7 1034 80.2
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 8.8e-294 1013.8 1030 77.8
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 2.0e-261 906.4 1060 70.1
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 7.0e-259 897.9 1043 71.4
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 9.5e-256 887.5 1041 70.4
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 3.2e-251 872.5 1045 69.8
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.3e-249 866.3 1050 69.4
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.0e-249 865.9 1050 69.3
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.0e-249 865.9 1050 69.3
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.1e-248 864.0 1069 68.7
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 9.5e-248 860.9 1061 68.3
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.6e-247 860.1 1061 67.5
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.1e-246 857.4 1042 70.3
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 5.2e-246 855.1 1082 67.3
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 1.2e-245 854.0 1043 67.9
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 4.4e-245 852.0 1039 68.6
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 7.5e-245 851.3 1061 68.0
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 9.8e-245 850.9 1024 69.3
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 4.9e-244 848.6 1098 66.0
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 7.1e-243 844.7 1110 66.1
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 9.2e-243 844.3 1035 69.1
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 1.2e-242 844.0 1105 66.2
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 6.0e-242 841.6 1040 68.3
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 2.3e-241 839.7 1046 57.6
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 2.3e-241 839.7 1061 67.6
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 3.9e-241 839.0 1045 67.7
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 5.1e-241 838.6 1088 66.6
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 1.2e-239 833.9 1101 66.5
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 1.2e-239 833.9 1043 68.2
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 2.1e-239 833.2 1041 68.0
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 2.1e-239 833.2 1046 68.0
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 2.8e-239 832.8 1034 63.2
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 4.7e-239 832.0 1050 67.5
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.1e-238 830.9 1051 67.4
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.4e-238 830.5 1046 67.4
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 3.1e-238 829.3 1030 68.0
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 2.6e-237 826.2 1112 65.4
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 2.6e-237 826.2 1110 64.5
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 9.9e-237 824.3 1110 65.1
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.7e-236 823.5 1110 65.1
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 2.2e-236 823.2 1037 66.8
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 3.7e-236 822.4 1049 67.8
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 4.9e-236 822.0 1189 46.8
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 6.4e-236 821.6 1013 67.7
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 8.4e-236 821.2 1108 65.0
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 2.4e-235 819.7 1105 65.6
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 3.2e-235 819.3 1112 64.7
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 5.4e-235 818.5 1029 68.3
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 9.2e-235 817.8 1076 66.5
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.6e-234 817.0 1076 66.4
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 2.1e-234 816.6 1126 64.3
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.7e-233 813.5 1107 65.0
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 6.2e-231 805.1 1056 65.4
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 8.1e-231 804.7 1081 64.1
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 4.4e-229 798.9 1038 66.9
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 5.8e-229 798.5 1030 66.8
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 9.9e-229 797.7 1048 64.8
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.8e-228 795.8 1069 65.7
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 3.8e-228 795.8 1040 65.8
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.4e-227 793.9 1065 66.1
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.9e-227 793.5 1030 66.3
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.3e-225 787.3 1042 66.6
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 5.1e-225 785.4 1044 65.0
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 5.1e-225 785.4 1045 65.3
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 2.8e-223 779.6 1052 63.5
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 1.4e-222 777.3 1051 66.1
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.8e-222 776.9 1061 63.3
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 2.4e-222 776.5 1061 63.1
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 3.1e-222 776.2 1044 64.7
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 5.3e-222 775.4 1040 63.6
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 4.4e-221 772.3 1077 62.0
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.7e-220 770.4 1080 63.9
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 6.4e-220 768.5 1048 60.3
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 3.2e-219 766.1 1033 66.7
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 1.7e-217 760.4 1042 64.7
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 3.0e-217 759.6 1042 65.1
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 5.1e-217 758.8 485 74.6
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.5e-216 757.3 891 73.0
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.3e-215 754.2 1056 63.2
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 1.3e-215 754.2 1029 64.5
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 2.1e-215 753.4 1128 44.2
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 6.2e-215 751.9 1042 64.4
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 1.8e-214 750.4 1041 65.5
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.3e-212 744.2 1080 61.5
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 1.1e-211 741.1 488 73.4
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.9e-211 740.3 489 73.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 1.2e-210 737.6 975 60.4
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 2.1e-210 736.9 487 71.9
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 8.7e-209 731.5 1110 61.9
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 1.9e-208 730.3 1058 61.7
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 6.2e-207 725.3 1019 63.3
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 6.9e-206 721.8 914 70.9
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.2e-203 713.0 821 63.3
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 8.7e-201 704.9 488 69.9
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.4e-182 644.4 1035 52.5
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 7.2e-179 632.1 1032 55.3
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 2.8e-175 620.2 1025 59.2
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 6.5e-172 609.0 438 71.2
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 4.1e-166 589.7 939 56.4
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 6.5e-164 582.4 482 60.0
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 8.9e-145 518.8 908 61.5
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.3e-137 494.2 827 66.4
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 8.3e-127 459.1 483 49.3
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 9.9e-120 435.6 484 47.7
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 1.6e-106 391.7 771 65.2
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 2.5e-99 367.9 253 68.0
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 7.9e-93 346.3 853 36.0
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 4.8e-90 337.0 536 37.3
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 4.5e-80 303.9 205 69.8
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 3.2e-78 297.7 201 69.2
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.6e-67 261.5 698 55.4
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 2.0e-64 251.9 486 35.6
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 4.2e-62 244.2 452 35.2
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 4.7e-61 240.7 165 70.3
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 4.7e-53 214.2 266 48.1
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 4.4e-51 207.6 334 43.4
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.7e-47 195.7 349 41.3
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 8.0e-45 186.8 342 40.9
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 1.5e-43 182.6 99 83.8
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.4e-41 176.0 93 90.3
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 2.9e-39 168.3 140 61.4
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 6.5e-39 167.2 140 60.7
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 1.0e-36 159.8 133 57.9
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.2e-36 157.5 112 70.5
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 6.8e-36 157.1 93 80.6
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.8e-28 132.5 93 67.7
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 2.6e-27 128.6 170 43.5
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.6e-24 119.4 192 41.7
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 3.9e-23 114.8 105 60.0
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 5.0e-23 114.4 301 34.9
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.5e-19 102.8 128 45.3
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 2.0e-19 102.4 130 47.7
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.8e-19 100.1 74 60.8
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.5e-11 76.3 43 83.7
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 4.6e-08 64.7 118 37.3
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.7e-07 62.8 43 72.1
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 2.3e-07 62.4 49 49.0
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 7.3e-06 57.4 36 77.8


User provided reference genes

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