Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.1e-103 380.2 216 100.0
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.7e-97 357.8 216 95.8
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 7.0e-87 324.3 216 84.7
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 8.0e-83 310.8 217 83.4
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.6e-77 290.8 216 75.9
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.1e-68 263.8 237 67.1
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.6e-65 252.7 216 70.4
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.4e-65 252.3 216 68.1
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 9.8e-65 250.8 217 67.7
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 5.4e-63 245.0 216 69.4
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.2e-62 243.8 221 66.5
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.7e-62 242.7 216 68.5
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.5e-62 242.3 216 66.2
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 4.6e-62 241.9 217 69.1
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.7e-61 240.0 223 67.3
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.3e-61 239.6 240 63.3
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.3e-61 239.6 226 64.6
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 3.9e-61 238.8 216 68.5
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.9e-61 238.8 216 65.7
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 5.0e-61 238.4 216 64.4
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 6.6e-61 238.0 224 66.1
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 8.6e-61 237.7 214 67.3
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.1e-60 237.3 223 65.5
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.1e-60 237.3 223 65.5
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.5e-60 236.9 216 69.4
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.9e-60 236.5 220 66.4
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 3.3e-60 235.7 215 66.5
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.2e-59 233.8 216 66.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.2e-59 233.8 216 68.5
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.6e-59 233.4 216 64.4
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-59 233.4 216 62.5
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.6e-59 233.4 216 66.7
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.6e-59 233.4 216 66.7
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 2.8e-59 232.6 220 65.0
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 8.1e-59 231.1 216 66.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.1e-59 231.1 229 59.4
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 4.0e-58 228.8 216 62.5
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.2e-58 228.4 229 61.1
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 5.2e-58 228.4 229 62.0
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 5.2e-58 228.4 229 61.1
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 6.8e-58 228.0 219 64.8
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 8.9e-58 227.6 233 62.2
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 8.9e-58 227.6 212 69.3
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.2e-57 227.3 216 64.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.5e-57 226.9 229 62.0
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.0e-57 226.5 217 64.1
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 5.8e-57 224.9 217 68.2
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 5.8e-57 224.9 227 62.6
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.8e-57 224.2 229 62.4
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.7e-56 223.4 216 63.9
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-56 223.0 235 61.7
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-56 223.0 235 61.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.9e-56 222.6 216 64.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 2.9e-56 222.6 218 66.5
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.7e-56 222.2 216 64.8
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 3.7e-56 222.2 216 66.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 4.9e-56 221.9 216 65.7
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.4e-55 220.3 214 66.8
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.9e-55 219.9 216 65.7
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.2e-55 219.2 216 63.4
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 4.1e-55 218.8 220 65.0
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.4e-55 218.4 221 63.3
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.2e-54 217.2 197 65.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.5e-54 215.7 126 84.9
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.6e-54 215.3 217 63.1
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 6.0e-54 214.9 126 86.5
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 7.8e-54 214.5 235 59.6
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 3.0e-53 212.6 227 61.2
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 3.0e-53 212.6 217 63.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 3.9e-53 212.2 234 62.0
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 5.1e-53 211.8 215 64.7
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 8.6e-53 211.1 126 85.7
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 8.6e-53 211.1 218 62.4
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.6e-53 211.1 232 59.1
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 8.6e-53 211.1 219 62.1
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.1e-52 210.7 127 84.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.5e-52 210.3 213 64.8
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.5e-52 209.5 127 84.3
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.5e-52 209.5 213 63.8
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 3.3e-52 209.1 216 62.0
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.3e-52 209.1 217 62.7
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.3e-52 208.8 234 57.7
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.6e-51 206.8 237 57.4
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.1e-51 206.5 218 59.2
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.1e-50 204.1 216 63.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.4e-50 203.8 205 63.9
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.4e-50 203.8 216 58.8
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.4e-50 203.8 126 84.1
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.1e-50 202.6 218 61.9
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 4.0e-50 202.2 216 59.7
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 5.2e-50 201.8 216 62.5
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.0e-49 199.9 122 82.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.0e-49 199.9 126 80.2
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 3.4e-49 199.1 255 56.1
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 5.8e-49 198.4 196 67.3
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 8.4e-48 194.5 260 55.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.1e-47 194.1 220 60.0
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 2.4e-47 193.0 127 77.2
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.1e-47 192.2 127 76.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 9.2e-47 191.0 204 58.3
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 3.5e-46 189.1 125 76.0
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 3.5e-46 189.1 125 76.0
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 4.6e-46 188.7 125 75.2
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 4.6e-46 188.7 218 59.6
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.0e-45 187.6 125 75.2
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.0e-45 187.6 212 59.4
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.7e-45 186.8 127 74.0
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 3.0e-45 186.0 214 53.7
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.5e-44 183.7 220 56.4
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 5.6e-44 181.8 204 56.9
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.6e-43 180.3 106 86.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 3.6e-43 179.1 202 53.0
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 6.2e-43 178.3 222 50.5
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 8.1e-43 177.9 223 55.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.2e-41 174.1 109 81.7
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.3e-40 170.6 216 52.8
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 8.4e-40 167.9 125 71.2
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.4e-39 166.4 199 58.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.2e-39 166.0 217 48.8
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.7e-38 162.9 173 63.0
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 6.0e-38 161.8 95 83.2
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.8e-38 161.4 210 49.5
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 8.7e-37 157.9 109 75.2
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.5e-36 157.1 197 53.8
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.3e-36 156.0 128 68.0
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.6e-35 152.5 126 61.1
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 5.3e-34 148.7 185 55.7
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.9e-34 148.3 109 73.4
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.2e-33 147.5 101 75.2
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.0e-33 146.7 125 64.0
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 3.4e-33 146.0 201 48.3
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 3.4e-33 146.0 201 48.3
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.5e-33 145.6 206 51.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-32 143.7 113 67.3
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 8.4e-32 141.4 219 44.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.5e-30 136.0 133 58.6
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 5.1e-29 132.1 216 44.4
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 6.7e-29 131.7 229 45.9
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 6.7e-29 131.7 115 64.3
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 5.6e-28 128.6 216 49.5
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 5.6e-28 128.6 103 61.2
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.8e-27 126.3 219 42.0
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 4.8e-27 125.6 128 55.5
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 4.8e-27 125.6 173 52.0
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.4e-26 123.2 150 57.3
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 4.0e-26 122.5 142 57.0
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.2e-23 112.8 140 57.1
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.6e-22 109.0 82 70.7
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-20 103.6 79 68.4
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 9.0e-18 94.7 174 44.3
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 5.5e-15 85.5 111 60.4
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 9.3e-15 84.7 48 81.2
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 4.6e-14 82.4 65 63.1
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.9e-12 77.0 108 43.5
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 5.3e-10 68.9 120 35.8
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 1.2e-09 67.8 112 56.2
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.3e-08 64.3 41 65.9
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.3e-08 64.3 111 46.8
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 3.8e-08 62.8 37 73.0
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 5.0e-08 62.4 94 43.6
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 4.2e-07 59.3 45 66.7
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 5.5e-07 58.9 150 41.3


User provided reference genes

Program Settings