Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.6e-92 342.8 179 100.0
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.6e-47 192.6 174 62.6
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.9e-45 186.4 94 100.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 1.1e-40 170.6 94 91.5
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 3.1e-40 169.1 176 55.1
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.5e-39 166.8 177 55.4
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.5e-39 165.2 98 82.7
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 4.5e-39 165.2 174 56.9
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.5e-39 165.2 173 56.6
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.8e-38 162.2 105 80.0
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.4e-37 160.2 173 53.2
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.4e-37 160.2 177 54.8
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 3.2e-37 159.1 174 52.9
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.5e-37 158.3 176 53.4
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.5e-37 158.3 176 53.4
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 7.2e-37 157.9 175 55.4
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.1e-36 156.4 176 52.8
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.7e-36 155.2 171 53.2
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.7e-36 155.2 176 52.8
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 3.9e-35 152.1 172 54.1
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.1e-34 150.6 174 51.7
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.5e-34 150.2 182 54.9
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 9.7e-34 147.5 177 51.4
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.3e-33 147.1 178 52.2
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.3e-33 147.1 174 50.6
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 4.8e-33 145.2 195 50.3
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 6.3e-33 144.8 178 51.7
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 6.3e-33 144.8 178 51.1
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 6.3e-33 144.8 178 51.1
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.1e-32 144.1 178 50.6
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.4e-32 143.7 177 50.3
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.8e-32 143.3 178 51.7
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.8e-32 143.3 178 50.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 2.4e-32 142.9 178 50.6
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 4.1e-32 142.1 174 51.1
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 4.1e-32 142.1 176 50.6
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.3e-32 141.7 173 49.7
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 5.3e-32 141.7 179 50.8
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 7.0e-32 141.4 165 50.3
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 7.0e-32 141.4 178 50.6
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 9.1e-32 141.0 178 50.0
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.2e-31 140.6 94 75.5
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.2e-31 140.6 173 52.6
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.5e-31 140.2 180 51.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.5e-31 140.2 180 51.7
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.5e-31 140.2 94 77.7
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.5e-31 140.2 178 50.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.5e-31 140.2 180 49.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.0e-31 139.8 175 52.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.6e-31 139.4 168 51.2
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 3.5e-31 139.0 174 49.4
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 3.5e-31 139.0 176 48.3
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 3.5e-31 139.0 180 51.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.5e-31 139.0 173 52.6
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 4.5e-31 138.7 177 50.8
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 4.5e-31 138.7 169 50.9
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.5e-31 138.7 173 49.1
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 4.5e-31 138.7 178 49.4
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 4.5e-31 138.7 174 51.1
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 5.9e-31 138.3 178 49.4
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.9e-31 138.3 174 47.1
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 7.7e-31 137.9 169 52.1
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.7e-31 137.9 170 51.2
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.0e-30 137.5 178 48.9
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.0e-30 137.5 178 49.4
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.3e-30 137.1 178 50.0
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-30 136.7 175 49.1
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.7e-30 136.7 175 49.1
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.7e-30 136.7 173 48.6
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.2e-30 136.3 174 50.0
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.2e-30 136.3 178 48.9
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.2e-30 136.3 178 48.3
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 2.9e-30 136.0 174 48.9
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 3.8e-30 135.6 178 49.4
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.8e-30 135.6 175 48.6
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.8e-30 135.6 89 77.5
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 6.5e-30 134.8 174 46.6
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.5e-30 134.8 175 48.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.5e-30 134.8 172 47.7
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.5e-30 134.8 172 47.7
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 8.5e-30 134.4 176 49.4
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 8.5e-30 134.4 176 48.9
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 8.5e-30 134.4 173 48.0
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.1e-29 134.0 175 49.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.1e-29 134.0 170 50.0
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.9e-29 133.3 170 50.0
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.9e-29 133.3 174 48.3
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.9e-29 133.3 178 48.9
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.5e-29 132.9 170 49.4
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.5e-29 132.9 174 47.7
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.2e-29 132.5 86 76.7
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.2e-29 132.1 178 48.3
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 5.5e-29 131.7 176 48.3
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.5e-29 131.7 178 47.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.6e-28 130.2 174 47.7
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.1e-28 129.8 89 74.2
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.1e-28 129.8 170 48.2
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.1e-28 129.8 181 46.4
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.7e-28 129.4 176 47.7
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 3.6e-28 129.0 159 49.1
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 3.6e-28 129.0 175 45.7
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 6.1e-28 128.3 94 70.2
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 6.1e-28 128.3 94 70.2
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 6.1e-28 128.3 89 73.0
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 6.1e-28 128.3 89 73.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 6.1e-28 128.3 174 48.3
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 8.0e-28 127.9 89 73.0
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 8.0e-28 127.9 89 73.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 8.0e-28 127.9 89 73.0
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.4e-27 127.1 174 47.7
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.8e-27 126.7 247 40.5
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.8e-27 126.7 171 49.1
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.3e-27 126.3 93 71.0
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.3e-27 126.3 90 71.1
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.0e-27 125.9 94 69.1
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.0e-27 125.9 93 69.9
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.0e-27 125.9 93 69.9
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 3.0e-27 125.9 93 69.9
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.0e-27 125.9 93 69.9
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 5.2e-27 125.2 93 69.9
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.2e-27 125.2 94 67.0
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 6.7e-27 124.8 91 68.1
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 8.8e-27 124.4 93 68.8
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-26 124.0 174 46.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.5e-26 123.6 174 46.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.0e-26 123.2 90 70.0
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.0e-26 123.2 94 66.0
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 2.6e-26 122.9 97 66.0
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 3.3e-26 122.5 199 43.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.3e-26 122.5 97 67.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 3.3e-26 122.5 97 64.9
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 5.7e-26 121.7 171 46.2
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 7.4e-26 121.3 93 67.7
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.8e-25 119.4 93 65.6
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.7e-25 119.0 95 64.2
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 6.3e-25 118.2 163 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 8.2e-25 117.9 83 68.7
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.4e-24 117.1 93 64.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.8e-24 116.7 179 44.7
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-23 113.2 93 64.5
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 7.7e-23 111.3 82 65.9
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 7.7e-23 111.3 159 44.7
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.3e-22 110.5 207 39.6
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.2e-22 109.8 106 57.5
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 2.2e-22 109.8 94 60.6
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.8e-22 109.0 93 63.4
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.0e-22 108.6 94 62.8
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.0e-22 108.6 93 63.4
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.0e-22 108.6 173 39.9
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.1e-21 107.5 177 41.8
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 4.2e-21 105.5 143 46.9
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 7.2e-21 104.8 77 66.2
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.4e-21 104.4 82 63.4
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.4e-19 100.5 179 42.5
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 2.3e-19 99.8 132 48.5
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 6.8e-19 98.2 90 65.6
AUR62015574 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.6e-18 96.3 81 71.6
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 5.7e-18 95.1 71 62.0
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.8e-17 92.8 89 60.7
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.7e-17 92.4 145 43.4
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.3e-17 91.7 135 44.4
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.1e-16 89.4 71 64.8
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 9.1e-16 87.8 73 61.6
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 9.1e-16 87.8 78 55.1
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-15 87.4 71 64.8
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-15 87.0 69 66.7
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.9e-15 85.1 174 38.5
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 3.2e-13 79.3 60 61.7
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-12 77.4 174 36.2
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 3.0e-11 72.8 167 35.9
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.2e-10 70.9 67 55.2
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.1e-08 62.8 76 47.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 5.0e-06 55.5 71 45.1


User provided reference genes

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