Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 3.4e-299 1031.9 1074 100.0
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 5.7e-206 722.2 972 94.1
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 4.6e-187 659.4 1078 76.0
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 7.8e-179 632.1 810 70.6
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 2.1e-152 544.3 812 64.4
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 2.6e-134 484.2 837 60.1
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 4.5e-126 456.8 789 65.4
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 7.7e-126 456.1 1078 67.3
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 3.2e-124 450.7 809 66.4
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 5.5e-124 449.9 790 64.7
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 1.6e-123 448.4 784 61.7
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 7.9e-123 446.0 756 58.9
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 1.1e-121 442.2 786 64.8
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 3.1e-119 434.1 720 58.3
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 1.5e-118 431.8 758 57.3
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 4.5e-118 430.3 795 61.6
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 8.5e-117 426.0 1077 63.8
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 4.2e-116 423.7 717 60.4
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 2.1e-115 421.4 766 63.4
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 6.1e-115 419.9 767 60.8
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.5e-113 415.2 777 60.5
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 9.7e-113 412.5 749 61.8
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 8.2e-112 409.5 790 61.0
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 7.0e-111 406.4 790 62.5
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 7.0e-111 406.4 275 74.2
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 2.6e-110 404.4 779 61.7
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 2.6e-110 404.4 778 61.2
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 3.5e-110 404.1 745 61.2
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 4.5e-110 403.7 780 55.3
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 5.9e-110 403.3 780 61.3
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 1.0e-109 402.5 781 54.7
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 1.7e-109 401.7 763 61.2
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 1.7e-109 401.7 764 59.4
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 2.9e-109 401.0 760 63.4
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 6.5e-109 399.8 732 57.5
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 6.5e-109 399.8 763 62.5
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 2.5e-108 397.9 764 56.4
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 7.2e-108 396.4 757 53.9
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 1.2e-107 395.6 779 60.1
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 1.2e-107 395.6 727 64.5
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 2.7e-107 394.4 749 62.3
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 4.7e-107 393.7 798 60.7
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 1.4e-106 392.1 758 60.9
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 5.2e-106 390.2 1093 63.0
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 8.8e-106 389.4 759 60.3
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 4.4e-105 387.1 762 61.8
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 3.7e-104 384.0 781 56.1
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.8e-104 383.6 764 57.9
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 2.0e-102 378.3 815 55.5
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 3.5e-102 377.5 1040 56.3
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 1.7e-101 375.2 792 55.1
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.2e-100 369.8 779 61.6
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 7.2e-100 369.8 785 59.5
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 1.2e-99 369.0 749 62.1
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 1.4e-98 365.5 752 62.4
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 1.2e-97 362.5 752 56.1
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 3.4e-97 360.9 790 60.8
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 9.8e-97 359.4 788 46.1
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 6.3e-96 356.7 270 66.3
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 4.1e-95 354.0 781 59.4
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 5.4e-95 353.6 758 64.2
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 1.6e-94 352.1 778 52.7
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 3.5e-94 350.9 793 56.4
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 1.7e-93 348.6 234 77.4
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 8.5e-93 346.3 851 55.0
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 1.1e-92 345.9 228 75.9
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 4.2e-92 344.0 754 54.6
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 7.2e-92 343.2 754 54.8
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 2.1e-91 341.7 802 58.7
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.7e-91 341.3 230 74.3
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 2.7e-91 341.3 263 66.9
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.4e-90 339.0 230 74.3
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 3.0e-90 337.8 749 57.7
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 1.2e-89 335.9 231 72.7
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 2.0e-89 335.1 752 54.5
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 5.7e-89 333.6 234 74.8
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 6.3e-88 330.1 191 83.2
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 7.0e-87 326.6 272 62.1
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 4.5e-86 323.9 230 71.3
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 4.5e-86 323.9 230 71.3
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 4.0e-82 310.8 763 59.2
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 8.3e-80 303.1 649 65.9
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 9.2e-79 299.7 221 69.7
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 2.2e-72 278.5 202 65.8
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 3.5e-70 271.2 759 51.9
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 4.1e-63 247.7 768 51.8
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 4.3e-52 211.1 225 51.6
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 3.9e-45 188.0 225 44.4
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 2.1e-35 155.6 90 74.4
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 1.1e-34 153.3 205 43.4
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 1.4e-34 152.9 540 59.6
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 2.2e-32 145.6 83 78.3
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 2.4e-31 142.1 568 59.0
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 1.2e-30 139.8 542 53.0
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 6.0e-30 137.5 200 38.5
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 2.8e-27 128.6 244 42.2
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 6.9e-26 124.0 532 49.8
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 1.1e-23 116.7 84 61.9
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 5.5e-23 114.4 543 47.9
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 7.1e-23 114.0 238 33.2
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 3.0e-21 108.6 127 49.6
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.4e-15 89.7 72 54.2
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 3.3e-12 78.6 50 70.0
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 4.8e-11 74.7 91 42.9
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 4.8e-11 74.7 74 47.3
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 1.4e-10 73.2 142 31.0
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 2.4e-10 72.4 139 31.7
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 3.1e-10 72.0 142 30.3
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 3.1e-10 72.0 103 34.0
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 4.1e-10 71.6 120 31.7
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 5.3e-10 71.2 136 30.9
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 6.9e-10 70.9 142 28.9
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 6.9e-10 70.9 142 31.0
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 9.0e-10 70.5 124 30.6
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 9.0e-10 70.5 124 33.1
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 1.5e-09 69.7 149 27.5
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.5e-09 69.7 128 31.2
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.5e-09 69.7 142 30.3
VMungo0251G0884 Vigna mungo HOM05D006877 ORTHO05D008735 2.0e-09 69.3 50 70.0
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 2.6e-09 68.9 120 30.8
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 3.4e-09 68.6 142 29.6
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 3.4e-09 68.6 139 30.9
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 5.9e-09 67.8 127 28.3
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 1.0e-08 67.0 143 30.8
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 1.0e-08 67.0 142 28.9
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 1.0e-08 67.0 57 52.6
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 1.3e-08 66.6 142 28.2
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.3e-08 66.6 142 28.2
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.3e-08 66.6 142 30.3
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 1.3e-08 66.6 135 26.7
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.7e-08 66.2 142 28.2
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.7e-08 66.2 142 28.2
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.2e-08 65.9 142 29.6
Cpa.g.sc34.115 Carica papaya HOM05D002479 ORTHO05D002675 2.2e-08 65.9 177 29.4
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 2.2e-08 65.9 207 26.6
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 2.2e-08 65.9 116 33.6
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.9e-08 65.5 142 27.5
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 2.9e-08 65.5 142 30.3
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 5.0e-08 64.7 125 33.6
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 6.5e-08 64.3 137 24.8
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 6.5e-08 64.3 142 29.6
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 8.5e-08 63.9 110 33.6
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 8.5e-08 63.9 142 28.2
Medtr1g040765 Medicago truncatula HOM05D002479 ORTHO05D002675 8.5e-08 63.9 133 27.1
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 1.1e-07 63.5 137 26.3
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 1.1e-07 63.5 129 28.7
Sabra13G0116800 Salix brachista HOM05D002479 ORTHO05D002675 1.1e-07 63.5 116 32.8
Prupe.3G233300 Prunus persica HOM05D002479 ORTHO05D002675 1.4e-07 63.2 142 28.2
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.9e-07 62.8 127 27.6
Ca_12209_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 1.9e-07 62.8 128 28.1
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.9e-07 62.8 126 29.4
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 1.9e-07 62.8 142 27.5
vmacro20006 Vaccinium macrocarpon HOM05D002479 ORTHO05D002675 1.9e-07 62.8 116 26.7
SalBow7G2923 Salvia bowleyana HOM05D002479 ORTHO05D002675 2.5e-07 62.4 108 32.4
AT1G73710 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 4.2e-07 61.6 125 30.4
CiPaw.01G192700 Carya illinoinensis HOM05D002479 ORTHO05D002675 5.5e-07 61.2 104 30.8
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 5.5e-07 61.2 122 30.3
Os03g0162900 Oryza sativa ssp. japonica HOM05D002479 ORTHO05D002675 5.5e-07 61.2 115 27.0
TPR.G22484 Trifolium pratense HOM05D002479 ORTHO05D002675 5.5e-07 61.2 115 27.8
AL2G33510 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 7.2e-07 60.8 125 30.4
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 7.2e-07 60.8 126 28.6
Manes.13G150200 Manihot esculenta HOM05D002479 ORTHO05D002675 7.2e-07 60.8 142 28.9
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 7.2e-07 60.8 113 28.3
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 7.2e-07 60.8 117 29.9
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 9.4e-07 60.5 126 26.2
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 9.4e-07 60.5 122 29.5
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 1.2e-06 60.1 103 31.1
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.2e-06 60.1 103 31.1
HanXRQChr14g0428761 Helianthus annuus HOM05D002479 ORTHO05D002675 1.6e-06 59.7 103 33.0
Lsat_1_v5_gn_5_67920 Lactuca sativa HOM05D002479 ORTHO05D002675 1.6e-06 59.7 91 35.2
BcaB03g15076 Brassica carinata HOM05D002479 ORTHO05D002675 2.7e-06 58.9 126 31.0
CBR_g32196 Chara braunii HOM05D000001 ORTHO05D000003 2.7e-06 58.9 97 35.1
Lj6g0009664 Lotus japonicus HOM05D002479 ORTHO05D002675 2.7e-06 58.9 112 27.7
Lj8P116T32 Lonicera japonica HOM05D002479 ORTHO05D002675 4.6e-06 58.2 113 29.2
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 4.6e-06 58.2 127 29.9
Sc06g0009220 Simmondsia chinensis HOM05D002479 ORTHO05D002675 4.6e-06 58.2 93 32.3
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 6.1e-06 57.8 122 28.7
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 7.9e-06 57.4 120 28.3
Medtr5g042370 Medicago truncatula HOM05D002479 ORTHO05D002675 7.9e-06 57.4 120 28.3


User provided reference genes

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