Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 0.0e+00 1172.1 575 100.0
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.6e-239 831.6 575 75.8
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 4.7e-239 831.2 575 75.1
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 8.3e-228 793.9 575 71.0
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 2.2e-188 662.9 576 62.7
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 1.1e-182 644.0 586 57.0
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 4.0e-182 642.1 584 59.2
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 3.4e-181 639.0 587 58.1
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.2e-180 636.3 586 56.3
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 7.1e-179 631.3 590 55.6
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.5e-176 623.6 583 56.8
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 9.6e-176 620.9 590 55.8
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 1.1e-174 617.5 589 55.0
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 1.4e-174 617.1 586 55.1
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 4.0e-174 615.5 588 56.3
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 5.3e-174 615.1 593 55.0
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 9.0e-174 614.4 609 55.5
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.2e-173 614.0 590 56.1
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.0e-172 610.9 589 55.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 2.2e-172 609.8 592 55.2
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.2e-172 609.8 583 55.2
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 3.8e-172 609.0 588 56.0
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 6.5e-172 608.2 587 56.4
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 1.9e-171 606.7 597 55.4
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 3.2e-171 605.9 592 54.2
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 5.5e-171 605.1 592 54.2
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 9.3e-171 604.4 619 52.7
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 3.5e-170 602.4 585 54.4
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.0e-169 600.9 599 53.6
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 1.8e-169 600.1 585 53.7
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 1.1e-168 597.4 586 53.4
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 1.1e-168 597.4 584 54.6
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.1e-168 597.4 594 54.4
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.1e-168 597.4 598 53.5
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 2.5e-168 596.3 584 53.6
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 3.3e-168 595.9 587 53.8
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 5.7e-168 595.1 578 54.8
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 7.4e-168 594.7 587 53.7
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 9.6e-168 594.3 584 55.7
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 2.1e-167 593.2 591 53.5
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 4.8e-167 592.0 587 54.2
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.1e-166 590.9 587 52.6
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 2.4e-166 589.7 588 54.3
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 4.1e-166 589.0 586 53.4
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 6.9e-166 588.2 585 53.5
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.5e-165 587.0 576 53.6
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 1.7e-164 583.6 585 54.2
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 1.9e-163 580.1 579 55.1
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.9e-163 580.1 574 53.8
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 7.2e-163 578.2 581 53.0
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 2.1e-162 576.6 574 53.0
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.7e-162 576.2 550 54.9
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.8e-161 573.5 583 53.5
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 5.1e-161 572.0 583 52.8
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 5.1e-161 572.0 588 53.6
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 5.1e-161 572.0 590 52.2
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 1.6e-159 567.0 581 53.4
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 2.8e-159 566.2 599 51.6
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 4.8e-159 565.5 574 52.4
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 8.2e-159 564.7 594 50.8
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 2.4e-158 563.1 574 53.0
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.4e-158 563.1 583 52.1
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 4.1e-158 562.4 574 53.0
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 9.0e-158 561.2 583 51.8
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.2e-157 560.8 574 52.8
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 5.9e-157 558.5 560 52.9
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 5.9e-157 558.5 584 52.4
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 8.5e-156 554.7 544 55.3
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 3.2e-155 552.7 594 50.5
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 3.2e-155 552.7 602 50.0
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 5.5e-155 552.0 580 50.9
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 7.2e-155 551.6 574 51.9
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.6e-154 550.4 575 52.0
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 6.1e-154 548.5 605 50.2
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 7.9e-154 548.1 601 51.4
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 6.7e-153 545.0 542 54.6
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 8.2e-151 538.1 629 49.0
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 3.1e-150 536.2 586 49.8
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 1.1e-147 527.7 595 50.3
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.4e-147 527.3 534 54.5
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 3.2e-147 526.2 551 53.0
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 7.4e-144 515.0 590 47.5
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.8e-140 502.7 607 48.1
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.2e-138 497.7 580 46.4
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 4.2e-131 472.6 579 45.6
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 7.2e-131 471.9 569 46.6
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 8.8e-129 464.9 297 72.4
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 8.8e-129 464.9 580 44.1
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.2e-125 454.5 667 42.4
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 7.7e-125 451.8 350 62.6
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 1.0e-124 451.4 296 68.9
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 6.1e-122 442.2 576 44.8
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 8.8e-121 438.3 568 43.3
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 7.5e-120 435.3 598 44.5
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 7.7e-117 425.2 297 68.0
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.6e-109 401.0 608 42.8
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.8e-98 363.6 244 71.3
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 6.2e-98 362.5 598 38.8
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 2.9e-95 353.6 610 38.2
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 4.3e-91 339.7 300 57.0
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.8e-89 334.3 498 41.4
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 9.6e-75 285.4 170 85.3
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.3e-71 275.0 317 47.0
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 4.9e-71 273.1 697 28.7
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.9e-55 220.7 212 52.8
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 1.2e-53 215.3 542 29.9
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 2.6e-48 197.6 620 27.1
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.9e-47 194.1 104 81.7
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 1.1e-30 139.0 184 44.0
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.8e-28 131.7 85 69.4
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 8.8e-28 129.4 197 42.6
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.6e-27 127.9 173 44.5
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.6e-27 127.9 173 44.5
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.3e-26 125.6 173 43.9
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 4.8e-26 123.6 197 41.6
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.8e-18 97.8 206 34.5
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 2.7e-16 91.3 150 40.7
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 7.2e-14 83.2 48 79.2
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.6e-11 74.7 121 38.8
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.4e-11 74.3 256 27.7
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 4.5e-08 63.9 41 63.4
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 4.5e-08 63.9 73 49.3
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.3e-07 62.4 33 72.7
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.3e-07 62.4 33 72.7
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.3e-07 62.4 33 72.7
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 3.8e-07 60.8 33 69.7


User provided reference genes

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