Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001714 Chenopodium quinoa HOM05D002675 ORTHO05D138398 3.4e-36 154.5 77 100.0
AUR62020067 Chenopodium quinoa HOM05D002675 ORTHO05D003322 1.3e-24 115.9 64 90.6
EL10Ac8g20361 Beta vulgaris HOM05D002675 ORTHO05D003322 1.5e-15 85.9 64 67.2
HanXRQChr15g0491751 Helianthus annuus HOM05D002675 ORTHO05D003322 1.9e-10 68.9 62 53.2
CDE03G0120 Ceratophyllum demersum HOM05D002675 ORTHO05D003322 2.5e-10 68.6 62 54.8
HanXRQChr05g0162181 Helianthus annuus HOM05D002675 ORTHO05D003322 2.5e-10 68.6 62 51.6
CDE06G1584 Ceratophyllum demersum HOM05D002675 ORTHO05D003322 3.2e-10 68.2 62 53.2
Potri.004G085700 Populus trichocarpa HOM05D002675 ORTHO05D003322 5.5e-10 67.4 62 51.6
AagrBONN_evm.TU.Sc2ySwM_344.3998 Anthoceros agrestis HOM05D002675 ORTHO05D003322 1.2e-09 66.2 62 51.6
HanXRQChr16g0529981 Helianthus annuus HOM05D002675 ORTHO05D003322 1.6e-09 65.9 62 51.6
Lj4C256T1 Lonicera japonica HOM05D002675 ORTHO05D003322 1.6e-09 65.9 62 51.6
PGR142G0804 Punica granatum HOM05D002675 ORTHO05D003322 1.6e-09 65.9 62 48.4
Potri.004G121500 Populus trichocarpa HOM05D002675 ORTHO05D003322 2.7e-09 65.1 62 50.0
Potri.017G137500 Populus trichocarpa HOM05D002675 ORTHO05D003322 2.7e-09 65.1 62 46.8
Aqoxy6G00032 Aquilegia oxysepala HOM05D002675 ORTHO05D003322 3.6e-09 64.7 62 50.0
EL10Ac7g15942 Beta vulgaris HOM05D002675 ORTHO05D003322 3.6e-09 64.7 63 47.6
PSO063G1548 Papaver somniferum HOM05D002675 ORTHO05D003322 3.6e-09 64.7 62 50.0
PSO063G7148 Papaver somniferum HOM05D002675 ORTHO05D003322 3.6e-09 64.7 62 50.0
TAR622G0094 Trochodendron aralioides HOM05D002675 ORTHO05D003322 3.6e-09 64.7 62 48.4
Ah.07g205730 Amaranthus hybridus HOM05D002675 ORTHO05D003322 4.6e-09 64.3 62 50.0
Ah.07g205830 Amaranthus hybridus HOM05D002675 ORTHO05D003322 6.1e-09 63.9 62 50.0
Eucgr.I02619 Eucalyptus grandis HOM05D002675 ORTHO05D003322 6.1e-09 63.9 62 50.0
Lsat_1_v5_gn_6_55221 Lactuca sativa HOM05D002675 ORTHO05D003322 6.1e-09 63.9 62 48.4
AagrBONN_evm.TU.Sc2ySwM_368.2237 Anthoceros agrestis HOM05D002675 ORTHO05D003322 7.9e-09 63.5 62 51.6
Aqoxy6G00801 Aquilegia oxysepala HOM05D002675 ORTHO05D003322 7.9e-09 63.5 62 50.0
ECA232G1503 Erigeron canadensis HOM05D002675 ORTHO05D003322 7.9e-09 63.5 62 46.8
PGSC0003DMG400013259 Solanum tuberosum HOM05D002675 ORTHO05D003322 7.9e-09 63.5 63 47.6
PSO063G5203 Papaver somniferum HOM05D002675 ORTHO05D003322 1.0e-08 63.2 62 48.4
PSO170G1138 Papaver somniferum HOM05D002675 ORTHO05D003322 1.0e-08 63.2 62 48.4
SalBow2G2895 Salvia bowleyana HOM05D002675 ORTHO05D003322 1.4e-08 62.8 64 50.0
SMO117G0053 Selaginella moellendorffii HOM05D002675 ORTHO05D003322 1.4e-08 62.8 62 48.4
vmacro18145 Vaccinium macrocarpon HOM05D002675 ORTHO05D003322 1.4e-08 62.8 62 45.2
CiPaw.05G180200 Carya illinoinensis HOM05D002675 ORTHO05D003322 1.8e-08 62.4 62 46.8
CiPaw.09G212000 Carya illinoinensis HOM05D002675 ORTHO05D003322 1.8e-08 62.4 62 46.8
Pp3c22_17820 Physcomitrium patens HOM05D002675 ORTHO05D003322 3.0e-08 61.6 62 48.4
Prupe.4G217800 Prunus persica HOM05D002675 ORTHO05D003322 3.0e-08 61.6 62 48.4
Rhsim05G0055000 Rhododendron simsii HOM05D002675 ORTHO05D003322 3.0e-08 61.6 62 46.8
RhsimUnG0229600 Rhododendron simsii HOM05D002675 ORTHO05D003322 3.0e-08 61.6 62 46.8
QL05p081293 Quercus lobata HOM05D002675 ORTHO05D003322 3.9e-08 61.2 62 48.4
Sabra04G0055000 Salix brachista HOM05D002675 ORTHO05D003322 3.9e-08 61.2 62 45.2
Sc06g0008210 Simmondsia chinensis HOM05D002675 ORTHO05D003322 3.9e-08 61.2 62 43.5
DCAR_001976 Daucus carota HOM05D002675 ORTHO05D003322 5.1e-08 60.8 62 48.4
DCAR_006728 Daucus carota HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 46.8
Duzib264G0156 Durio zibethinus HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 46.8
Lalb_Chr10g0104171 Lupinus albus HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 46.8
Nitab4.5_0007409g0020 Nicotiana tabacum HOM05D002675 ORTHO05D003322 6.7e-08 60.5 63 46.0
Peaxi162Scf00152g00095 Petunia axillaris HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 48.4
Peaxi162Scf00357g00048 Petunia axillaris HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 46.8
Prupe.4G273200 Prunus persica HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 46.8
SGA_v2.0_scaffold131G34401 Striga asiatica HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 45.2
TWI12G0816 Tripterygium wilfordii HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 46.8
TWI75G0358 Tripterygium wilfordii HOM05D002675 ORTHO05D003322 6.7e-08 60.5 62 45.2
CSS0021631 Camellia sinensis var. sinensis HOM05D002675 ORTHO05D003322 8.8e-08 60.1 62 45.2
AUR62006124 Chenopodium quinoa HOM05D002675 ORTHO05D003322 8.8e-08 60.1 62 46.8
AUR62009645 Chenopodium quinoa HOM05D002675 ORTHO05D003322 8.8e-08 60.1 62 46.8
AUR62036041 Chenopodium quinoa HOM05D002675 ORTHO05D003322 8.8e-08 60.1 62 46.8
Lj2g0026250 Lotus japonicus HOM05D002675 ORTHO05D003322 8.8e-08 60.1 62 46.8
SalBow2G2903 Salvia bowleyana HOM05D002675 ORTHO05D003322 8.8e-08 60.1 62 45.2
vmacro18519 Vaccinium macrocarpon HOM05D002675 ORTHO05D003322 8.8e-08 60.1 62 43.5
Gohir.D09G020700 Gossypium hirsutum HOM05D002675 ORTHO05D003322 1.1e-07 59.7 62 48.4
Gorai.006G024500 Gossypium raimondii HOM05D002675 ORTHO05D003322 1.1e-07 59.7 62 48.4
Mapoly0067s0022 Marchantia polymorpha HOM05D002675 ORTHO05D003322 1.1e-07 59.7 62 46.8
Peaxi162Scf00078g00146 Petunia axillaris HOM05D002675 ORTHO05D003322 1.1e-07 59.7 62 43.5
Peaxi162Scf00325g00093 Petunia axillaris HOM05D002675 ORTHO05D003322 1.1e-07 59.7 62 45.2
VMungo0331G0032 Vigna mungo HOM05D002675 ORTHO05D003322 1.1e-07 59.7 62 46.8
Actinidia28793 Actinidia chinensis HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 45.2
ATR0605G154 Amborella trichopoda HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 46.8
Dinv05835 Davidia involucrata HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 46.8
ECA233G3127 Erigeron canadensis HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 43.5
Lj2P514T26 Lonicera japonica HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 48.4
MBI04_g22934_MAGBIO Magnolia biondii HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 43.5
Nitab4.5_0002465g0040 Nicotiana tabacum HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 46.8
TAR622G1128 Trochodendron aralioides HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 45.2
TAR623G0802 Trochodendron aralioides HOM05D002675 ORTHO05D003322 1.5e-07 59.3 62 43.5
FvH4_1g26190 Fragaria vesca HOM05D002675 ORTHO05D003322 2.0e-07 58.9 62 45.2
FAN19G2495 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.0e-07 58.9 62 45.2
FAN23G1351 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.0e-07 58.9 62 45.2
FAN28G2548 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.0e-07 58.9 62 45.2
Manes.01G121600 Manihot esculenta HOM05D002675 ORTHO05D003322 2.0e-07 58.9 62 43.5
ClCG01G019420 Citrullus lanatus HOM05D002675 ORTHO05D003322 2.6e-07 58.5 63 44.4
COL.COLO4_25178 Corchorus olitorius HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 46.8
Gohir.A09G021300 Gossypium hirsutum HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 46.8
Gohir.D07G222400 Gossypium hirsutum HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 46.8
Gorai.001G256700 Gossypium raimondii HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 46.8
Lsat_1_v5_gn_9_108800 Lactuca sativa HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 46.8
Medtr4g107030 Medicago truncatula HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 45.2
Oeu061059.1 Olea europaea HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 46.8
Solyc11g011780.3 Solanum lycopersicum HOM05D002675 ORTHO05D003322 2.6e-07 58.5 63 44.4
Sopen11g006630 Solanum pennellii HOM05D002675 ORTHO05D003322 2.6e-07 58.5 63 44.4
Thecc.04G074600 Theobroma cacao HOM05D002675 ORTHO05D003322 2.6e-07 58.5 62 45.2
arahy.Tifrunner.gnm1.ann1.SC6CUD Arachis hypogaea HOM05D002675 ORTHO05D003322 3.3e-07 58.2 62 45.2
CAN.G222.155 Capsicum annuum HOM05D002675 ORTHO05D003322 3.3e-07 58.2 62 45.2
MELO3C007816.2 Cucumis melo HOM05D002675 ORTHO05D003322 3.3e-07 58.2 63 44.4
CsaV3_6G046130 Cucumis sativus L. HOM05D002675 ORTHO05D003322 3.3e-07 58.2 63 44.4
Hma1.2p1_0158F.1_g069900 Hydrangea macrophylla HOM05D002675 ORTHO05D003322 3.3e-07 58.2 62 45.2
TPR.G12626 Trifolium pratense HOM05D002675 ORTHO05D003322 3.3e-07 58.2 61 50.8
HPP92_003151 Vanilla planifolia HOM05D002675 ORTHO05D003322 3.3e-07 58.2 63 46.0
MSTRG.8548 Avicennia marina HOM05D002675 ORTHO05D003322 4.4e-07 57.8 62 45.2
Nitab4.5_0002158g0240 Nicotiana tabacum HOM05D002675 ORTHO05D003322 4.4e-07 57.8 62 45.2
RcHm_v2.0_Chr3g0485681 Rosa chinensis HOM05D002675 ORTHO05D003322 4.4e-07 57.8 62 43.5
Sed0026849 Sechium edule HOM05D002675 ORTHO05D003322 4.4e-07 57.8 62 45.2
arahy.Tifrunner.gnm1.ann1.GRL64C Arachis hypogaea HOM05D002675 ORTHO05D003322 5.7e-07 57.4 62 43.5
CAN.G569.2 Capsicum annuum HOM05D002675 ORTHO05D003322 5.7e-07 57.4 62 45.2
AUR62004358 Chenopodium quinoa HOM05D002675 ORTHO05D003322 5.7e-07 57.4 62 41.9
Cc07_g13040 Coffea canephora HOM05D002675 ORTHO05D003322 5.7e-07 57.4 62 43.5
Medtr3g064880 Medicago truncatula HOM05D002675 ORTHO05D003322 5.7e-07 57.4 62 40.3
Oeu038114.2 Olea europaea HOM05D002675 ORTHO05D003322 5.7e-07 57.4 62 45.2
Migut.F00983 Erythranthe guttata HOM05D002675 ORTHO05D003322 7.4e-07 57.0 62 43.5
Solyc06g053800.3 Solanum lycopersicum HOM05D002675 ORTHO05D003322 7.4e-07 57.0 62 45.2
Sopen06g018920 Solanum pennellii HOM05D002675 ORTHO05D003322 7.4e-07 57.0 62 45.2
CBR_g22250 Chara braunii HOM05D002675 ORTHO05D003322 9.7e-07 56.6 62 45.2
Ca_17078_v3 Cicer arietinum L. HOM05D002675 ORTHO05D003322 9.7e-07 56.6 62 43.5
Haze_00937 Corylus avellana HOM05D002675 ORTHO05D003322 9.7e-07 56.6 62 43.5
Glyma.18G042700 Glycine max HOM05D002675 ORTHO05D003322 9.7e-07 56.6 62 41.9
Phvul.010G132700 Phaseolus vulgaris HOM05D002675 ORTHO05D003322 9.7e-07 56.6 62 45.2
Actinidia35718 Actinidia chinensis HOM05D002675 ORTHO05D003322 1.3e-06 56.2 61 44.3
Ciclev10011515m.g Citrus clementina HOM05D002675 ORTHO05D003322 1.3e-06 56.2 62 41.9
Haze_00061 Corylus avellana HOM05D002675 ORTHO05D003322 1.3e-06 56.2 62 43.5
Sed0017630 Sechium edule HOM05D002675 ORTHO05D003322 1.3e-06 56.2 62 41.9
SEGI_39799 Sequoiadendron giganteum HOM05D002675 ORTHO05D003322 1.3e-06 56.2 62 50.0
MSTRG.27 Avicennia marina HOM05D002675 ORTHO05D003322 1.7e-06 55.8 62 45.2
CANSAT35G1376 Cannabis sativa HOM05D002675 ORTHO05D003322 1.7e-06 55.8 62 40.3
Glyma.11G213900 Glycine max HOM05D002675 ORTHO05D003322 1.7e-06 55.8 62 41.9
SHI18121 Sapria himalayana HOM05D002675 ORTHO05D003322 1.7e-06 55.8 62 41.9
TPR.G26692 Trifolium pratense HOM05D002675 ORTHO05D003322 1.7e-06 55.8 62 41.9
TPR.G30935 Trifolium pratense HOM05D002675 ORTHO05D003322 1.7e-06 55.8 62 41.9
Atru.chr1.3154 Acer truncatum HOM05D002675 ORTHO05D003322 2.2e-06 55.5 62 41.9
BraA01t04358Z Brassica rapa HOM05D002675 ORTHO05D003322 2.2e-06 55.5 63 46.0
Cre15.g640250 Chlamydomonas reinhardtii HOM05D002675 ORTHO05D003322 2.2e-06 55.5 62 46.8
Lj1g0014452 Lotus japonicus HOM05D002675 ORTHO05D003322 2.2e-06 55.5 62 43.5
BcaC09g47982 Brassica carinata HOM05D002675 ORTHO05D003322 2.8e-06 55.1 63 46.0
BolC1t05528H Brassica oleracea HOM05D002675 ORTHO05D003322 2.8e-06 55.1 63 46.0
CAN.G222.69 Capsicum annuum HOM05D002675 ORTHO05D003322 2.8e-06 55.1 62 43.5
CAN.G397.74 Capsicum annuum HOM05D002675 ORTHO05D003322 2.8e-06 55.1 62 43.5
FvH4_4g00390 Fragaria vesca HOM05D002675 ORTHO05D003322 3.7e-06 54.7 62 43.5
FAN17G0869 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.7e-06 54.7 62 43.5
Psat5g119160 Pisum sativum HOM05D002675 ORTHO05D003322 3.7e-06 54.7 63 42.9
Aqoxy7G03451 Aquilegia oxysepala HOM05D002675 ORTHO05D003322 4.8e-06 54.3 62 41.9
CAN.G334.16 Capsicum annuum HOM05D002675 ORTHO05D003322 4.8e-06 54.3 62 40.3
RcHm_v2.0_Chr4g0385341 Rosa chinensis HOM05D002675 ORTHO05D003322 4.8e-06 54.3 62 43.5
PGSC0003DMG400016281 Solanum tuberosum HOM05D002675 ORTHO05D003322 4.8e-06 54.3 62 41.9
arahy.Tifrunner.gnm1.ann1.6N32GT Arachis hypogaea HOM05D002675 ORTHO05D003322 6.3e-06 53.9 62 43.5
CAN.G49.27 Capsicum annuum HOM05D002675 ORTHO05D003322 8.2e-06 53.5 62 40.3
THA.LOC104800459 Tarenaya hassleriana HOM05D002675 ORTHO05D003322 8.2e-06 53.5 62 41.9
THA.LOC104805649 Tarenaya hassleriana HOM05D002675 ORTHO05D003322 8.2e-06 53.5 62 41.9
THA.LOC104805650 Tarenaya hassleriana HOM05D002675 ORTHO05D003322 8.2e-06 53.5 62 41.9
unitig_749.g14303 Utricularia gibba HOM05D002675 ORTHO05D003322 8.2e-06 53.5 62 41.9


User provided reference genes

Program Settings